Table 1.

RNA-Seq sequencing and read mapping to the grapevine genome

Treatmenta	Replicateb	Total readsc	Filtered readsd	%	Mapped readse	%	Unique readsf	%	Multi-readsg	%
C	1	20480361	19388264	95	17975427	93	17473619	97	501808	3
	2	20182309	19095859	95	17935380	94	17392482	97	542898	3
	3	15856292	14845528	94	13327853	90	12749078	96	578775	4
T39	1	24312739	23208015	95	21103884	91	20207496	96	896388	4
	2	35315408	32565826	92	30409086	93	29495812	97	913274	3
	3	25081653	23722385	95	21873968	92	21145558	97	728410	3
C+P.v.	1	21934228	20800485	95	19240139	92	18603657	97	636482	3
	2	25097152	23684317	94	21637677	91	20896985	97	740692	3
	3	22471334	21555054	96	19384445	90	18634940	96	749505	4
T39+P.v.	1	22897386	21318685	93	18406407	86	17576560	95	829847	5
	2	29049603	26710912	92	24801196	93	23981057	97	820139	3
	3	22603588	21369934	95	19558774	92	18859902	96	698872	4

^a Grapevine leaves of control (C), Trichoderma harzianum T39-treated (T39), Plasmopara viticola-inoculated control (C+P.v.) and P. viticola-inoculated T39-treated (T39+P.v.) plants.

^b Biological replicates (plants), numbered from 1 to 3.

^c Total sequenced reads as sum of reads obtained from two replicates of sequencing for each treatment.

^d Reads passing the quality check and the corresponding percentage (%) of total reads.

^e Reads mapping to Pinot Noir grapevine genome [77] Release 3 [78], and the corresponding percentage (%) of filtered reads.

^f Reads mapping to unique locations in the grapevine genome, and the corresponding percentage (%) of mapped reads.

^g Reads mapping to more than one location (2–100 matches) in the grapevine genome, and the corresponding percentage (%) of mapped reads.