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. 2013 Jan 22;8(1):e54384. doi: 10.1371/journal.pone.0054384

Figure 3. Minimum free energy (MFE) structure obtained for STMV RNA without the SHAPE data.

Figure 3

The structure was predicted using RNAstructure with default parameters. Nucleotides are colored according to their SHAPE reactivity (see scale). The SHAPE data are not consistent with this model, since several base paired regions have high reactivity values.