Table 1.
Primers used to design and validate transgenic rats expressing E46K mutated α-synuclein.
1.1. Primers designed to create the AB box. Capitalized “Outside primers” indicate attached base pairs to create restriction sites. “Inside primers” indicate the total size of the PCR sequence. | |||
---|---|---|---|
Outside primers | A Box Forward | GGCGCGCCgatggtctcgatctcctgac | |
B Box Reverse | TTAATTAAcactctcatcctcatcttcctc | ||
Inside primers | E46K A Box Reverse | ccatggacgacgcccttcttggttttggagcctac | 596bp |
E46K B Box Forward | aagaagggcgtcgtccatggtgtggcaacaggtaagc | 700bp |
1.2. Primers designed to sequence the six α-synuclein exons and their surrounding intronic regions. The size of the PCR sequence is also given. | |||
---|---|---|---|
Exon | 5’ Forward primer 3’ | 5’ Reverse primer 3’ | Size |
1 | gagatagggacgaggagcac | ggacgaaagccaggtcaagtc | 740bp |
2 | gccaagatggatgggagatg | tcacaggggcatatcaaagtc | 778bp |
3* | gagttcatgccattcttctg | cttttgcttcaccacatctgc | 1508bp |
4 | gttgtgggcacctgtaatcc | atttgcatggcatttatctgg | 937bp |
5 | aaatgatccacctgcctcag | tcttcatcttcctcctcctc | 707bp |
6 | taactctgactactactactg | ccacaaaatccacagcacac | 492bp |
indicates that this primer sequence pair surrounds the region containing the mutated exon.