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. Author manuscript; available in PMC: 2014 Feb 1.
Published in final edited form as: Exp Neurol. 2012 Nov 12;240:44–56. doi: 10.1016/j.expneurol.2012.11.007

Table 1.

Primers used to design and validate transgenic rats expressing E46K mutated α-synuclein.

1.1. Primers designed to create the AB box. Capitalized “Outside primers” indicate attached base pairs to create restriction sites. “Inside primers” indicate the total size of the PCR sequence.
Outside primers A Box Forward GGCGCGCCgatggtctcgatctcctgac
B Box Reverse TTAATTAAcactctcatcctcatcttcctc
Inside primers E46K A Box Reverse ccatggacgacgcccttcttggttttggagcctac 596bp
E46K B Box Forward aagaagggcgtcgtccatggtgtggcaacaggtaagc 700bp
1.2. Primers designed to sequence the six α-synuclein exons and their surrounding intronic regions. The size of the PCR sequence is also given.
Exon 5’ Forward primer 3’ 5’ Reverse primer 3’ Size
1 gagatagggacgaggagcac ggacgaaagccaggtcaagtc 740bp
2 gccaagatggatgggagatg tcacaggggcatatcaaagtc 778bp
3* gagttcatgccattcttctg cttttgcttcaccacatctgc 1508bp
4 gttgtgggcacctgtaatcc atttgcatggcatttatctgg 937bp
5 aaatgatccacctgcctcag tcttcatcttcctcctcctc 707bp
6 taactctgactactactactg ccacaaaatccacagcacac 492bp
(*)

indicates that this primer sequence pair surrounds the region containing the mutated exon.