Table 2. Genes with significant differential expression (p<0.005).

Strain pair	Up regulated genes	Down regulated genes
MDR MANU1 vs DS MANU1	rpoβ, sigM, 1687c	embC,Rv1686c, drrB, uvrB, recB, recA,echA2, Rv1457c
MDR CAS vs DS CAS	tatA, mmpS5, ppsD, lexA, whiB1, Rv0282	rplV, sigE, rpsA, efpA, pfkB, uvrB, Rv3615c, Rv0706, Rv3879c, Rv0569, Rv1221, Rv1630, Rv2846c, Rv3831, Rv2029c, Rv2025c
MDR Beijing vs DS Beijing		sigL, rpsL, recF, Rv2728, Rv3701