Table 1.
Differentially-expressed miRNAs between CMS and MF of Brassica juncea
| UNIQID | Description | norm_MF | norm_CMS | AC 1 2 | Fisher 1 2 | Chi2x2 1 2 | CMS/MF |
|---|---|---|---|---|---|---|---|
| ath-MIR156a-p3 |
TGCTCACTGCTCTTTCTGTCAGA |
50 |
0 |
0 |
0 |
0 |
down |
| ath-MIR156e-p3 |
GCTTACTCTCTCTCTGTCACC |
91 |
9 |
0 |
0 |
0 |
down |
| ath-miR156h_L + 1 |
TTGACAGAAGAAAGAGAGCAC |
14 |
47 |
0.000005 |
0.000027 |
0.000024 |
up |
| ath-miR158a |
TCCCAAATGTAGACAAAGCA |
31 |
1 |
0 |
0 |
0 |
down |
| ath-miR159a |
TTTGGATTGAAGGGAGCTCTA |
3375 |
5739 |
0 |
0 |
0 |
up |
| ath-MIR159a-p5 |
AGCTGCTAAGCTATGGATCCC |
54 |
12 |
0 |
0 |
0 |
down |
| ath-miR159c_R-2 |
TTTGGATTGAAGGGAGCTC |
77 |
17 |
0 |
0 |
0 |
down |
| ath-miR164a |
TGGAGAAGCAGGGCACGTGCA |
253 |
472 |
0 |
0 |
0 |
up |
| ath-miR164b |
TGGAGAAGCAGGGCACGTGCA |
253 |
472 |
0 |
0 |
0 |
up |
| ath-miR164c |
TGGAGAAGCAGGGCACGTGCG |
102 |
51 |
0.000006 |
0.000046 |
0.000037 |
down |
| ath-MIR164c-p3 |
CACGTGTTCTACTACTCCAAC |
1 |
17 |
0.000034 |
0.000145 |
0.000162 |
up |
| ath-miR165a |
TCGGACCAGGCTTCATCCCCC |
3116 |
4420 |
0 |
0 |
0 |
up |
| ath-miR165b |
TCGGACCAGGCTTCATCCCCC |
3116 |
4420 |
0 |
0 |
0 |
up |
| ath-miR166a |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166b |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166c |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166d |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166e |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166f |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR166g |
TCGGACCAGGCTTCATTCCCC |
2589 |
3591 |
0 |
0 |
0 |
up |
| ath-miR167a |
TGAAGCTGCCAGCATGATCTA |
6244 |
864 |
0 |
0 |
0 |
down |
| ath-MIR167a-p3 |
GATCATGTTCGCAGTTTCACC |
568 |
83 |
0 |
0 |
0 |
down |
| ath-miR167b |
TGAAGCTGCCAGCATGATCTA |
6244 |
864 |
0 |
0 |
0 |
down |
| ath-miR167d_R-2 |
TGAAGCTGCCAGCATGATCT |
359 |
42 |
0 |
0 |
0 |
down |
| ath-MIR169e-p3 |
GCAAGTTGACTTTGGCTCTGT |
141 |
39 |
0 |
0 |
0 |
down |
| ath-miR319a |
TTGGACTGAAGGGAGCTCCCT |
45330 |
82597 |
0 |
0 |
0 |
up |
| ath-miR319b |
TTGGACTGAAGGGAGCTCCCT |
45330 |
82597 |
0 |
0 |
0 |
up |
| ath-MIR319b-p5 |
GAGCTTTCTTCGGTCCACTC |
0 |
20 |
0 |
0.000002 |
0.000008 |
up |
| ath-miR390a |
AAGCTCAGGAGGGATAGCGCC |
289 |
527 |
0 |
0 |
0 |
up |
| ath-MIR390a-p3_1ss5AG |
CGCTGTCCATCCTGAGTTTCA |
52 |
102 |
0.000009 |
0.000069 |
0.000056 |
up |
| ath-miR390b |
AAGCTCAGGAGGGATAGCGCC |
289 |
527 |
0 |
0 |
0 |
up |
| ath-miR395a |
CTGAAGTGTTTGGGGGAACTC |
36 |
7 |
0.000002 |
0.000009 |
0.00001 |
down |
| ath-miR395d |
CTGAAGTGTTTGGGGGAACTC |
36 |
7 |
0.000002 |
0.000009 |
0.00001 |
down |
| ath-miR395c |
CTGAAGTGTTTGGGGGAACTC |
36 |
7 |
0.000002 |
0.000009 |
0.00001 |
down |
| ath-miR396b |
TTCCACAGCTTTCTTGAACTT |
260 |
171 |
0.000002 |
0.000021 |
0.000018 |
down |
| ath-miR408 |
ATGCACTGCCTCTTCCCTGGC |
805 |
1272 |
0 |
0 |
0 |
up |
| ath-MIR408-p5 |
ACAGGGAACAAGCAGAGCATG |
39 |
117 |
0 |
0 |
0 |
up |
| ath-miR845a |
CGGCTCTGATACCAATTGATG |
121 |
53 |
0 |
0 |
0 |
down |
| peu-MIR2916-p3 |
TCTCAACCATAAACGATGCCGACC |
523 |
335 |
0 |
0 |
0 |
down |
| peu-MIR2916-p5 |
GTCTCAACCATAAACGATGCCGAC |
316 |
228 |
0.000014 |
0.000185 |
0.000161 |
down |
| ahy-miR167-5p_1ss21TC |
TGAAGCTGCCAGCATGATCTC |
80 |
2 |
0 |
0 |
0 |
down |
| ahy-miR159_1ss7TC |
TTTGGACTGAAGGGAGCTCTA |
33 |
6 |
0.000003 |
0.000014 |
0.000015 |
down |
| rco-miR319d_2ss20TC21TA |
TTGGACTGAAGGGAGCTCCCA |
201 |
83 |
0 |
0 |
0 |
down |
| peu-MIR2911-p3_1ss6CT |
GCGTGTCGGCCGGGGGACGGGCTG |
19 |
0 |
0.000001 |
0.000004 |
0.000013 |
down |
| peu-MIR2911-p5_1ss3TA |
GGAGGACTGCTCGAGCTGC |
18 |
1 |
0.000018 |
0.000076 |
0.000096 |
down |
| smo-MIR1103-p3 |
GTGACCTCCCGGGAAGTCC |
179 |
117 |
0.000034 |
0.000374 |
0.000313 |
down |
| PC-3p-77 | GCGATTTGTCTGGTTAATTCCGTT | 199 | 94 | 0 | 0 | 0 | down |