Table 1.
Clinical, environmental and reference L pneumophila strains
| Sample number | Accession number | Biological origin | Type of sample | Serogroup | Monoclonal antibody subgroup | Sequence type* |
|---|---|---|---|---|---|---|
| Reference genome | ||||||
| LP Philadelphia | AE017354.1 | USA 1974 | Clinical | 1 | Philadelphia | ST36 |
| Published genomes | ||||||
| LP ATCC 43290 | CP003192.1 | USA | Clinical | 12 | NA | ST187 |
| LP Alcoy | CP001828.1 | Spain | Clinical | 1 | ND | ST578 |
| LP Corby | CP000675.2 | UK | Clinical | 1 | Knoxville | ST51 |
| LP Lens | CR628337.1 | France | Clinical | 1 | Benidorm | ST15 |
| LP 130b | FR687201.1 | USA | Clinical | 1 | Benidorm | ST42 |
| LP Paris | CR628336.1 | France | Clinical | 1 | Philadelphia | ST1 |
| LP Lorraine | FQ958210.1 | France | Clinical | 1 | ND | ST47 |
| LPHL06041035 | FQ958211.1 | France | Environmental | 1 | ND | ST734 |
| Outbreak investigation isolates | ||||||
| LP033 | ERS166051 | Patient 1 | Clinical | 1 | Philadelphia | ST37 |
| LP035 | ERS166045 | Patient 2 | Clinical | 1 | Philadelphia | ST37 |
| LP617 | ERS166047 | Patient 3 | Clinical | 1 | Allentown/France | ST47 |
| LP056 | ERS166052 | Site A cooling tower 1 | Environmental | 1 | Philadelphia | ST37 |
| LP427 | ERS166050 | Site A cooling tower 2 | Environmental | 1 | Philadelphia | ST37 |
| LP467 | ERS166049 | Domestic spa pool | Environmental | 1 | Philadelphia | ST37 |
| LP423 | ERS166048 | Site B cooling tower 1 | Environmental | 1 | Oxford/OLDA | ST1 |
*Sequence type was derived from the genome sequence data and was concordant with the results of the seven-allele sequence-based typing method.
NA, Not applicable; ND, not determined.