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. 2013 Jan;79(2):663–671. doi: 10.1128/AEM.02809-12

Table 1.

General features of the genomes of two Pseudoxanthomonas strains

Characteristic Value for:
BD-a59 11-1
Size (bp) 3,452,554 3,419,049
GC content (%) 67.65 70.21
Total no. of genes 3,202 3,171
No. of protein coding sequences 3,149 3,110
No. of proteins with function prediction 2,254 2,344
DNA coding density (%) 87.48 89.47
Protein assigned to COG (%) 79.11 79.44
Average gene length (bp) 1,078.24 1,078.22
No. of rRNA operons 1 2
Total no. of tRNA genes 50 52
ANIa (%) 76.59
No. of confirmed CRISPRs (no. questionable)b 1 (14) 0 (7)
No. of genomic islands 24 15
a

ANI, average nucleotide identity (22).

b

CRISPRs of more than two spacers with three or more perfect repeats are “confirmed CRISPRs,” whereas CRISPRs with fewer than three perfect repeats or nonidentical repeats are considered “questionable” (30).