Table 3.
Characteristics of the genomic islands found in the genome of P. spadix BD-a59
| GI | Size (kbp) | No. of genes | GC content (%) | No. of hypothetical proteins | No. of transposases and integrases | Predicted function(s) |
|---|---|---|---|---|---|---|
| 1 | 12.64 | 18 | 58.6 | 16 | 0 | Unknown |
| 2 | 5.93 | 4 | 59.5 | 1 | 0 | Transport |
| 3 | 4.97 | 3 | 61.9 | 0 | 0 | Amino acid metabolism |
| 4 | 8.42 | 11 | 62.1 | 6 | 1 | Copper resistance |
| 5 | 4.80 | 5 | 61.6 | 1 | 0 | Heavy metal response |
| 6 | 16.81 | 14 | 61.1 | 3 | 2 | Cadmium transport |
| 7 | 4.86 | 9 | 64.2 | 2 | 0 | Arsenate reduction |
| 8 | 5.48 | 7 | 64.5 | 4 | 0 | Metal binding |
| 9 | 8.08 | 11 | 61.9 | 4 | 0 | Toluene degradation |
| 10 | 10.19 | 13 | 60.0 | 8 | 0 | Unknown |
| 11 | 4.56 | 5 | 62.0 | 0 | 0 | Alkane degradation |
| 12 | 8.33 | 8 | 56.5 | 0 | 0 | Phenylpropionate degradation |
| 13 | 5.34 | 7 | 62.6 | 0 | 0 | Biphenyl degradation |
| 14 | 4.04 | 3 | 57.8 | 0 | 0 | Biphenyl degradation |
| 15 | 17.16 | 14 | 60.5 | 8 | 0 | Unknown |
| 16 | 5.46 | 8 | 64.4 | 1 | 2 | Integrase/transposase |
| 17 | 55.15 | 47 | 61.2 | 33 | 1 | Restriction/modification |
| 18 | 4.12 | 7 | 63.5 | 2 | 0 | Motility |
| 19 | 17.38 | 16 | 58.8 | 4 | 0 | Hydrocarbon metabolism |
| 20 | 14.17 | 15 | 60.6 | 2 | 2 | Aromatic hydrocarbon metabolism |
| 21 | 4.55 | 4 | 53.4 | 1 | 0 | Xylene degradation |
| 22 | 5.64 | 7 | 59.9 | 0 | 0 | ABC transporter |
| 23 | 4.24 | 6 | 62.9 | 3 | 0 | Unknown |
| 24 | 5.40 | 8 | 58.8 | 5 | 0 | Unknown |