Table 1.
Standard | Nominal log10 concnb | Real-time PCR |
Digital PCR |
Variability (P value) | ||||||
---|---|---|---|---|---|---|---|---|---|---|
No. of positive specimens/total no. of attempts | Mean viral load (log10 no. of copies/ml) | SD | % CV | No. of positive specimens/total no. of attempts | Mean viral load (log10 no. of copies/ml) | SD | % CV | |||
AcroMetrix | 2.48 | 9/9 | 2.11 | 0.34 | 16.11 | 7/7c | 2.23 | 0.24 | 10.76 | 0.409 |
AcroMetrix | 3.48 | 9/9 | 3.15 | 0.12 | 3.81 | 8/8c | 3.06 | 0.08 | 2.61 | 0.248 |
AcroMetrix | 4.48 | 9/9 | 4.19 | 0.12 | 2.86 | 8/8c | 4.16 | 0.03 | 0.72 | 0.003 |
AcroMetrix | 5.48 | 9/9 | 5.25 | 0.07 | 1.33 | 9/9 | 5.19 | 0.03 | 0.58 | 0.048 |
NIST | 1 | 0/9 | 0 | 0 | NA | 1/9 | 0.27 | 0.82 | 303.7 | NA |
NIST | 2 | 7/9 | 1.09 | 0.67 | 61.47 | 3/9 | 0.83 | 1.24 | 149.4 | 0.104 |
NIST | 3 | 9/9 | 2.35 | 0.23 | 9.79 | 7/9 | 2.1 | 1.2 | 57.14 | <0.001 |
NIST | 4 | 9/9 | 3.29 | 0.09 | 2.74 | 9/9 | 3.66 | 0.1 | 2.73 | 0.637 |
NIST | 5 | 9/9 | 4.34 | 0.05 | 1.15 | 9/9 | 4.63 | 0.07 | 1.51 | 0.348 |
NIST | 6 | 9/9 | 5.35 | 0.06 | 1.12 | 9/9 | 5.6 | 0.05 | 0.89 | 0.394 |
NIST | 6.7 | 9/9 | 6.1 | 0.11 | 1.8 | 9/9 | 6.21 | 0.08 | 1.29 | 0.345 |
WHO | 1 | 6/9 | 1.17 | 0.91 | 77.78 | 1/7c | 0.29 | 0.76 | 262.07 | 0.660 |
WHO | 2 | 9/9 | 2.18 | 0.38 | 17.43 | 3/7c | 0.91 | 1.14 | 125.27 | 0.008 |
WHO | 3 | 9/9 | 3.16 | 0.11 | 3.48 | 9/9 | 2.71 | 0.1 | 3.69 | 0.727 |
WHO | 4 | 9/9 | 4.14 | 0.11 | 2.66 | 8/8c | 3.77 | 0.04 | 1.06 | 0.007 |
WHO | 5 | 9/9 | 5.13 | 0.07 | 1.36 | 9/9 | 4.75 | 0.02 | 0.42 | 0.004 |
WHO | 6 | 9/9 | 5.99 | 0.05 | 0.83 | 8/8c | 5.72 | 0.02 | 0.35 | 0.020 |
The number of positive specimens/number of attempts, the mean log-transformed measurements, and standard deviation of the log-transformed measurements are given for each technology at each concentration of each standard. Bartlett's test was used to compare the variability of the two technologies, based on the SD. A small-variability P value indicates that there is significant evidence that the two technologies do not have equal standard deviation in their measurements. CV, coefficient of variation; NA, not available.
Nominal concentrations in IU/ml for AcroMetrix and WHO standards and number of copies/ml for NIST standards.
Decreased replicates due to failure of the instrument (either failed to generate or read the droplet).