Table 2.
Cumulative precision (top value in each cell) and recall (bottom value) for prediction of TSSs with CAGE support in a given cell type using the TSS-proximal labels of ChromHMM and Segway
| Cell type | Segway |
ChromHMM |
Combined TSS | ||||
|---|---|---|---|---|---|---|---|
| Tss | +TssF | +PromF | Tss | +TssF | +PromF | ||
| K562 | 15.65 | 6.46 | 10.9 | 5.62 | 4.44 | 8.37 | |
| 60.6 | 65.9 | 92.6 | 93.5 | 93.6 | 97.0 | ||
| GM12878 | 18.0 | 6.96 | 3.61 | 7.73 | 3.89 | 2.63 | 5.62 |
| 90.6 | 93.7 | 94.9 | 93.6 | 93.9 | 94.2 | 96.9 | |
| H1 hESC | 15.27 | 7.90 | 2.87 | 12.84 | 8.71 | 5.22 | 9.08 |
| 82.9 | 94.0 | 94.2 | 78.9 | 79.3 | 79.4 | 95.7 | |
| HeLa-S3 | 11.78 | 5.82 | 8.63 | 5.44 | 3.88 | 11.06 | |
| 64.3 | 68.3 | 84.6 | 84.9 | 85.2 | 87.8 | ||
| HepG2 | 20.30 | 6.01 | 8.10 | 4.23 | 2.95 | 9.18 | |
| 52.7 | 53.8 | 81.5 | 81.8 | 82.0 | 88.6 | ||
| HUVEC | 12.72 | 6.96 | 11.35 | 7.29 | 5.61 | 11.22 | |
| 83.4 | 89.2 | 91.3 | 91.9 | 92.1 | 94.2 | ||