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. 2012 Nov 15;41(2):e39. doi: 10.1093/nar/gks1026

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© The Author(s) 2012. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

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Figure 6. — Comparison between DiffSplice and Cufflinks on the lung differentiation data set. (a) Differential expression discovered by DiffSplice using MapSplice alignment without annotation. (b) Comparison among differentially transcribed genes discovered by DiffSplice, Cufflinks with annotation and Cufflinks without annotation. (c) Percentage of significant genes with differential transcription against number of transcripts. (d) Number of significant genes with differential transcription against percentage of samples with gene coverage <3 in each group. (e) Differential transcription in gene PI4KB, identified by DiffSplice but missed by Cufflinks without annotation.