Table 2.
Gene boundary information for AchPV1 and AchPV2, including sequence boundaries for the start and finish of transcription for each gene and length and sequence boundaries of IGRsa
| Virus sequence | Start | Gene | Stop | IGR sequence boundaries | Size (nt) |
|---|---|---|---|---|---|
| AchPV1 | gGGCCcGaac | Consensus | ttttTTTAAGAAAAAa | ||
| AGGCCCGAAAGT | N | TTTTAAGAAAAAA | TTGAAATTT | 9 | |
| GGGCCCGAAG | P | TTTAAGAAAAAA | CCAAAAGT | 8 | |
| GGGCCCGGAC | M | TTTTAAGAAAAAA | CTTGAGGATATATA.........GAAGAAAAGAAGAAT | 69 | |
| GGGCCCGGAC | F | TTTAAGAAAAAA | CTGATAAGTTGAGG.........AAGATAATCAAACAT | 42 | |
| GGGCCCGACC | HN | TTTAAGAAAAAA | GTTGAGTAGAAGTG.........CAGGACAATAATAAT | 90 | |
| GGGCCAGAAT | L | TTTTTTTAAGAAAAA | CGACTTATTGATTTT ... 5′ trailer | ||
| AchPV2 | gGGCCcGAa | Consensus | tTTTAAGAAAAAa | ||
| AGGCCCGAATGT | N | TTTTAAAGAAAAA | CAAAGAT | 7 | |
| GGGCCCGAAT | P | TTTAAGAAAAAA | CTTATAAACTGATACACTAAAAGT | 24 | |
| GGGCCAGAAC | M | TTTAAGAAAAAA | TGTAACCATCTTTAAGTGCAAGTT | 24 | |
| GGGCCCGACC | F | TTTAAGAAAAAA | CTATGCT | 7 | |
| GGGCGCGAAC | HN | TTTAAGAAAAAA | TCTAATAATGATCATATAACCCT | 23 | |
| GGGCCAGAAT | L | ATTAAGAAAAAA | CTTATTCATTTTCCC ... 5′ trailer |
a
Uppercase letters denote the base where conserved across all genes; lowercase letters show the majority base where site is variable across the genome.