Table 1. Estimates of per cell mRNA inventories for laboratory bacterial cultures (top) and natural marine bacteria (bottom).
Cells | Method | Total RNA content (fg cell−1) | mRNAs cell−1 | Reference |
---|---|---|---|---|
Laboratory studies | ||||
Escherichia coli | Biochemical analysis | NA | 1380 | Neidhardt and Umbarger, 1996 |
Escherichia coli | Single-cell microscopy | NA | 1800a | Taniguchi et al., 2010 |
Vibrio alginolyticus | RNA recovery | 28 | 2288b | Kramer and Singleton, 1992 |
Natural communities | ||||
Coastal bacterioplankton, GA | Internal standard | NA | 142–238 | Gifford et al., 2011 |
Bacterioplankton, Amazon Plume | Internal standard | NA | 85–255 | Satinsky et al., in preparation |
Coastal bacterioplankton, GA | RNA recovery | 0.6–1.3 | 96–190b | Gifford et al., 2011 |
Coastal bacterioplankton, NY | RNA recovery | 1.6–5.4 | 135–458b | Lee and Kemp, 1994 |
Coastal bacterioplankton, CA | RNA recovery | 1.9–9.5 | 161–805b | Simon and Azam, 1989 |
Abbreviation: NA, not available.
Calculated by extrapolation from 137 genes (see text).
Calculated by assuming total RNA contains 4% mRNA by mass (Neidhardt and Umbarger, 1996) and bacterial mRNAs have an average length of 924 nucleotides (Xu et al., 2006) and therefore an average weight of 4.72 × 10−4 fg.