Table 1.
Statistics of the small RNA sequences generated from the five tissue types of B. rapa
| Seedling | Root | Petiole | Leaf | Flower | Total | |
|---|---|---|---|---|---|---|
|
Raw reads |
258,431 |
22,729 |
17,263,448 |
21,372,578 |
8,737,275 |
47,654,461 |
|
Reads of 17 to 36 nt |
243,640 |
21,680 |
11,813,169 |
20,598,405 |
8,124,108 |
40,801,002 |
|
Unique reads |
156,651 |
17,771 |
2,219,348 |
5,150,968 |
2,925,823 |
9,130,544b |
|
Genome matcha |
51,147 |
5,184 |
509,173 |
1,575,267 |
1,106,694 |
2,752,756b |
|
Unassembled sequence matcha |
60,937 |
6,638 |
1,049,984 |
1,686,965 |
919,182 |
3,139,339b |
|
NCBI NR database matcha |
8,514 |
1,003 |
122,912 |
352,798 |
153,372 |
577,500b |
| No matcha | 36,053 | 4,946 | 537,279 | 1,535,938 | 746,575 | 2,660,949b |
a one mismatch is allowed, b non-redundant unique reads.