Table 2. Nucleotide polymorphisms detected among reads within four annotated contigs from S. maritima and S. alterniflora.
| Gene annotation |
Contig length |
Number of reads |
Number of polymorphisms |
Number of haplotypes |
||||
|---|---|---|---|---|---|---|---|---|
| S. maritima | S. alterniflora | S. maritima | S. alterniflora | S. maritima | S. alterniflora | S. maritima | S. alterniflora | |
| Phosphoenol-pyruvate Carboxykinase (LOC_Os03g15050.4|13103.m01762|cDNA) | 632 | 470 | 132 | 50 | 8 | 3 | 4 | 3 |
| HECT domain-containing protein, expressed (LOC_Os12g24080.1|13112.m02448|cDNA) | 4294 | 3961 | 127 | 85 | 113 | 103 | 4 | 4 |
| Homeobox domain-containing protein, expressed—Transcription factor MEIS1 and related HOX domain proteins (LOC_Os12g43950.4|13112.m08878|cDNA) | 3031 | 2777 | 185 | 129 | 6 | 4 | 4 | 3 |
| Heat shock protein, putative, expressed (LOC_Os06g50300.1|13106.m05403|cDNA) | 3019 | 3391 | 67 | 263 | 42 | 5 | 4 | 4 |