Table 3. Single-nucleotide polymorphisms among assembled reads of the gene coding the HECT domain-containing protein in Spartina maritima and Spartina alterniflora.
| HECT domain-containing protein, expressed | ||||||
|---|---|---|---|---|---|---|
| S. alterniflora contig 03059 (length=3961, reads=85) | ||||||
| Nucleotide position | 1034 | 1085 | 1100 | 1119 | 1130 | 1167 |
| Haplotype 1 | C | T | C | A | A | T |
| Haplotype 2 | T | T | T | A | A | C |
| Haplotype 3 | T | C | T | A | A | C |
| Haplotype 4 | C | T | C | G | C | T |
| S. maritima contig 02799 (length=4294, reads=127) | ||||||
| Nucleotide position | 1344 | 1352 | 1371 | 1382 | 1401 | 1419 |
| Haplotype 1 | C | C | G | C | C | T |
| Haplotype 2 | T | C | G | C | C | T |
| Haplotype 3 | T | T | A | A | A | C |
Analysis of a 200-bp window, including two species-specific polymorphic sites (positions 1304, 1085 in S. alterniflora and positions 1344 and 1401 in S. maritima) and four polymorphic sites shared between the two species. These shared polymorphic sites are vertically aligned in the table.