Table 4.
List of some differentially expressed genes in LD muscle between Lantang and Landrace pigs.
| Gene symbol | Gene description | Genbank ID | Fold change |
|---|---|---|---|
| Transcription factor | |||
| CEBPB | CCAAT/enhancer binding protein (C/EBP), beta | AF103945 | 1.95 |
| LPIN1 | lipin 1 | EU164847 | 5.39 |
| PPARGC-1 | peroxisome proliferator activated receptor gamma, coactivator 1 alpha | NM_213963 | 3.19 |
| GADD45A | growth arrest and DNA-damage-inducible, alpha | NM_001044599 | 4.81 |
| MYF6 | myogenic factor 6 | XM_001924251 | 3.13 |
| Adipocyte differentiation and function | |||
| ADIPOQ | adiponectin, C1Q and collagen domain containing | NM_214370 | 3.76 |
| KLF5 | highly similar to NM_001730.3 Kruppel-like factor 5 (Homo sapiens) | CN161957 | 5.97 |
| LOC100154721 | similar to adipose specific 2 | XM_001927304 | 2.5 |
| Fatty acid uptake and transport | |||
| LPL | Lipoprotein lipase | NM_214286 | 2.94 |
| FABP4 | fatty acid binding protein 4, adipocyte | NM_001002817 | 2.17 |
| APOOL | Similar to Apolipoprotein O-like | XM_001925965 | -3.74 |
| Fatty acid synthesis and metabolism | |||
| FASN | fatty acid synthase | NM_001099930 | 6.67 |
| SCD | stearoyl-CoA desaturase | NM_213781 | 11.83 |
| ELOVL6 | highly similar to NP_076995.1 ELOVL family member 6, elongation of long chain fatty acids | AK232419 | 3 |
| CYP3A29 | cytochrome P450 3A29 | NM_214423 | 3.11 |
| GPX1 | glutathione peroxidase 1 | NM_214201 | 2.44 |
| CACT | highly similar to NP_000378.1 solute carrier family 25 (carnitineacylcarnitine translocase), member 20 | AK233127 | -2.23 |
| Lipid metabolism | |||
| ANXA1 | annexin A1 | XM_001925719 | 2.04 |
| CLU | clusterin | NM_213971 | 3.46 |
| ANXA2 | annexin A2 | NM_001005726 | 3.04 |
| PDE4B | phosphodiesterase 4B, cAMP-specific | NM_001130018 | 2.09 |
| Triglyceride synthesis | |||
| DGAT2 | highly similar to NP_080660.1 diacylglycerol O-acyltransferase 2 (Mus musculus) | BE015012 | 2.77 |
| Insulin sensitivity | |||
| IGF2 | Insulin-like growth factor 2 (somatomedin A) | NM_213883 | -5.51 |
| OGT | O-linked N-acetylglucosamine (GlcNAc) transferase | NM_001039748 | -2.23 |
“+” and “-” indicated the up- and down- regulated expression in Lantang vs. Landrace pigs, respectively.