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| QTL Name | Position | Left Marker | Right Marker | LOD | PVE (%) | Additive |
| qMVchr26 | 25.00 | HAU3344 | GhCAD6-ss | 5.59 | 8.07 | 0.31 |
| qFSchr16 | 39.00 | NAU3180b | FPG012-ss | 2.55 | 4.48 | 1.06 |
| qFEchr15.1 | 25.00 | GhPEPC2-ds | BNL1688 | 4.18 | 7.35 | −0.30 |
