Table 3. Most abundant miRNA profile in pig kidney (CN>350).

miRNA name	Total counts (%)	IsomiRs	IB	WB	LD	LW	PT	ME	VT
Hsa-miR-200b-3p	27,097 (23.50%)	123	239	4,924	4,298	5,163	3,683	6,987	1,803
Ssc-miR-125b	8,809 (7.64%)	51	567	1,245	933	2,170	2,322	798	774
Ssc-miR-23b	5,412 (4.69%)	59	116	992	638	935	1,090	673	968
Ssc-miR-126	5,274 (4.57%)	49	158	928	419	1,308	1,186	660	615
φSsc-miR-23a	5,156 (4.47%)	51	123	828	535	801	1,015	598	1,256
Ssc-miR-192	3,863 (3.35%)	41	89	723	194	1,105	810	484	458
φSsc-miR-99a	3,781 (3.28%)	32	339	615	375	884	888	234	446
Hsa-miR-200c-3p	3,478 (3.02%)	32	42	367	309	1,076	762	631	291
Ssc-miR-10b	2,846 (2.47%)	31	69	589	271	504	519	561	333
Ssc-miR-126*	2,796 (2.43%)	26	60	440	387	503	599	418	389
φSsc-miR-30d	1,977 (1.72%)	31	82	223	142	757	434	238	101
φSsc-miR-125a	1,369 (1.19%)	29	103	192	194	308	288	173	111
Ssc-miR-10a	1,317 (1.14%)	19	43	287	176	219	188	284	120
Ssc-miR-365-3p	986 (0.86%)	16	10	168	173	225	246	100	64
Ssc-miR-92a	797 (0.69%)	17	12	96	105	217	125	145	97
Ssc-miR-204	748 (0.65%)	14	10	61	271	173	133	58	42
Ssc-miR-378	743 (0.64%)	20	67	127	52	179	148	103	67
Ssc-miR-26a	598 (0.52%)	17	3	94	76	159	134	91	41
Bta-miR-200a	485 (0.42%)	9	18	87	99	95	58	101	27
φBta-miR-193b	473 (0.41%)	26	69	73	83	102	78	36	32
φSsc-miR-30e-5p	461 (0.40%)	14	27	57	43	134	93	56	51
Ssc-miR-100	405 (0.35%)	6	20	55	72	92	83	39	44
Ssc-miR-99b	350 (0.30%)	8	15	43	47	102	73	28	42

IB: Iberian breed, WB: European Wild Boar, LD: Landrace breed, LW: Large White breed, PT: Piétrain breed, ME: Meishan breed, VT: Vietnamese breed.

miRNA name represents the most expressed miRNA sequence in the cluster.

Underlined miRNAs correspond to miRNAs that had not been previously described.

φ: miRNA clusters whose predominant isomiR is different from that described in miRBase database (v18, November 2011).