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. 2013 Jan 25;8(1):e54715. doi: 10.1371/journal.pone.0054715

Table 1. Structural statistics of the DEAF-1 MYND domain.

NOE-based distance restraints 1
short-range, |i-j|< = 1 439
medium-range, 1<|i-j|<5 180
long-range, |i-j|> = 5 183
Total 802
Dihedral angle restraints 2
Φ+Ψ angles 62
Residual dipolar coupling restraints 3
HNN+NC′+HNC′+Hα Cα 63
Coordinate RMSD for residues 502–541(Å)
Backbone 0.36±0.10
Heavy atoms 1.10±0.18
Consistency
RDC Q-factor 0.09±0.002
Ramachandran plot statistics (%) 4
Most favoured regions 80.3
Allowed regions 18.9
Generously allowed regions 0.8
Disallowed regions 0.0

Statistics are given for the 20 lowest energy structures after water refinement out of 100 calculated.

1

Distance restraints were derived from NOE peak intensities using CYANA [31], and then introduced as unambiguous distances in CNS. No distance restraint was violated by more than 0.5 Å.

2

Torsion angles were predicted using TALOS+ [30]. No dihedral angle restraint was violated by more than 5°.

3

RDC restraints were incorporated using a harmonic potential. Force constants of 0.2, 0.1, 0.3, and 0.6 kcal mol−1 Hz−2 for HHN, NC′, HNC′ and Hα Cα respectively, were used to reflect the estimated error in the measurement.

4

Ramachandran plot statistics were obtained using PROCHECK [64] for residues 502–541.