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. 2013 Jan 25;8(1):e54942. doi: 10.1371/journal.pone.0054942

Table 2. Cellular Functions of Identified Proteins.

Functions Identified Proteins
Cell Signaling ALOX15, NRAS, RAB3A, CFL1, RRAD, ATP2A1, RAB7A, ATP2A3, LOC643751, NOS3, RAP1A, KPNB1, TGM2, GNB1, PPP2CB, HP, RRAS2, CADPS, GNAO1, EEF1A1, DNAJA3, YWHAQ (includes EG:22630), IPO5, NME2, RHEB, (STAT4, GNAI2, GNAS, RHOG, PRKAA1, LOC643751, YWHAE, STAT1), (HK1, MTOR, ERP44, GRB2, RSU1, PPP3CA, SOD1, SOD2)
Cell-To-Cell Signaling and Interaction EHD1, ALOX15, CFL1, RAB21, APOA1, RRAD, CD36, INPPL1, NOS3, RAP1A, GNB1, ROCK2, TGM2, PLA2G6, CAPN1, TXN, MARCKS (includes EG:4082), CLIC4, AKR1B1, HSPB1, FGA, (GNAI2, STAT4, GNAS, PSME1, SERPINC1, C3, MAP2K3, STAT3, LOC643751, STAT1, Ube2n, YWHAG, TNS1), (SLK, MTOR, GRB2, RSU1, SOD1, SOD2)
Energy Production DLD, CD36, PRKAA2, NOS3, LONP1, MSRA PRDX5 UBA1, (ECHS1, ECI1)
Nucleic AcidMetabolism NRAS, ACACB, CD36, RAB7A, NOS3, TGM2, KPNB1, GNB1, RRAS2, GNAO1, EEF1A1, DLD, PRKAA2, MLYCD, HMGCL, ALDH2, NME2, AKR1B1, ALDH6A1, PRDX5, UBA1, LONP1, IPO5, (GNAI2, GNAS, AMPD3, GPD1, STAT3), (ADSL, GFPT1, SOD1)
Lipid Metabolism QKI, APOA1, PTPMT1, CRAT, SH3GLB1, LIPE, INPPL1, NOS3, ROCK2, GNB3, PTGES2, HBB (includes EG:3043), GPLD1, PRKAA2, MGLL, MARCKS (includes EG:4082), GPX4, HMGCL, PITPNB, PLA2G16, ALOX15, ACACB, RAB5A, RRAD, RAB7A, CD36, PCYT1A, PLA2G6, HP, ARF1, GNAO1, CPT2, DLD, EEF1A1, AKR1B1, MAP4, TPP1, MLYCD, (GNAI2, GNAS, SERPINC1, SDHB, LPIN1, C3, FABP4, PCCA, YWHAH, ECHS1, ECI1, SUCLG1, PRKAA1), (SDHA, MTOR, ACBD3, SOD1, SOD2)
Carbohydrate Metabolism IDH3G, APOA1, PTPMT1, PPP1CB, LIPE, CRAT, SH3GLB1, FN3K, INPPL1, NOS3, PRKAG1, GNB1, ROCK2, HK2, GPLD1, PRKAA2, MGLL, PPM1A, IDH3A, GPX4, MARCKS (includes EG:4082), PLA2G16, ACACB, AKR1B1, ALDH2, SLC9A3R1, RAB5A, RRAD, COQ3, CD36, PFKM, PCYT1A, PLA2G6, ARF1, EEF1A1, MLYCD, (C3, GPD1, PRKAA1, STAT3, PGAM2, ACO1, FABP4), (HK1, MTOR, GFPT1, GRB2, SOD1, SOD2)
Amino AcidMetabolism PPP2CB, PPP2R1A, PPP2CA, PPP1CB, PPM1A, NOS3, ALDH6A1, MSRA, PCYT1A, (MTHFD1,PCCA), (SLK, HK1, MTOR, PPP2R2A, F2, PPP3CA, SOD1)
Small Molecule Biochemistry QKI, PPP2CA, SH3GLB1, LIPE, NOS3, GNB1, ROCK2, GNB3, PTGES2, HBB (includes EG:3043), CADPS, MGLL, PPM1A, GPX4, PITPNB, ACACB, RRAD, PFKM, PPP2CB, PLA2G6, PPP2R1A, GNAO1, DLD, CPT2, MLYCD, APOA1, IDH3G, PTPMT1, PPP1CB, CRAT, FN3K, INPPL1, PRKAG1, TGM2, HK2, GPLD1, PRKAA2, IDH3A, MARCKS (includes EG:4082), HMGCL, LONP1, IPO5, PLA2G16, ALOX15, NRAS, RAB5A, COQ3, CD36, RAB7A, PCYT1A, KPNB1, ARF1, HP, ALDH2, ALDH6A1, AKR1B1, PRDX5, MSRA, NME2, MPST, MAP4, UBA1, RRAS2, EEF1A1, TPP1, (AMPD3, SDHB, GPD1, C3, YWHAZ, STAT3, MTHFD1, GNAI2, STAT4, GNAS, GPX3, SERPINC1, LPIN1, PRKAA1, AKR7A2, PCCA, APRT, SUCLG1, FABP4, YWHAH, ACO1, ECHS1, ECI1, PGAM2, STAT1), (SLK, SDHA, HK1, ADSL, MTOR, GFPT1, ERP44, PPP2R2A, GRB2, ACBD3, PPP3CA, SOD1, SOD2)
Molecular Transport RAB1A, APOA1, RAB2A, ATP2A1, CRAT, LIPE, PPP1CB, INPPL1, NOS3, ROCK2, HK2, HBB (includes EG:3043), COQ7, CADPS, PRKAA2, PPM1A, MGLL, PITPNB, ALOX15, NRAS, ACACB, RAB3A, RAB5A, CFL1, TIMM44, RRAD, RAB10, RAB7A, CD36, ATP2A3, PCYT1A, KPNB1, PLA2G6, HP, ARF1, ARF3, GNAO1, CPT2, EEF1A1, DLD, RAB3GAP2, MLYCD, PRDX5, AKR1B1 ALDH2, NME2, CLIC4, RAB6A, (GNAI2, GNAS, SERPINC1, LPIN1, C3, YWHAZ, ACO1, YWHAE, FABP4, APRT, NDRG2, YWHAH, PGAM2, ECI1, STAT3), (GFPT1, MTOR, ERP44, GRB2, ACBD3, PPP3CA, SOD1, SOD2)
Protein Trafficking RAB1A, RAB5A, TIMM44, CFL1, RAB2A, CD36, RAB10, RAB7A, KPNB1, ARF1, ARF3, RAB3GAP2, NME2, RAB6A, (YWHAE, YWHAG), (MTOR, SOD1, SOD2)
DNA Replication/Recombination/Repair NRAS, CFL1, RAB7A, TGM2, KPNB1, GNB1, DYNLL1, RRAS2, GNAO1, PRKAA2, TXN, HSPB1, NME2, SELENBP1, UBA1, LONP1, IPO5, (GNAI2, GNAS, AMPD3, GPD1, PIN1, STAT1), (SOD1, SOD2)
Gene Expression PTGES2, PPP2CA, (STAT4, GNAS, SERPINC1, YWHAZ, MAP2K3, STAT3, PIN1, STAT1, ELAVL1, YWHAE, ACO1, TCEB1), (GFPT1, MTOR, PSMC3)
Cellular Function and Maintenance EHD1, NRAS, RAB5A, RAB3A, ATP2A1, CD36, RAB7A, LIPE, NOS3, TGM2, ROCK2, DYNC1H1, PLA2G6, FIS1, HP, DYNLL1, EHD4, CADPS, EHD2, PRKAA2, TXN, DNM1L, (GNAI2, STAT4, GNAS, SERPINC1, LPIN1, C3, SEC23IP, PRKAA1, STAT3, STAT1, LOC643751), (HK1, MTOR, PLS3, GRB2, RSU1, PPP3CA)
Cellular Compromise EHD1, ALOX15, RAB1A, CFL1, RRAD, ATP2A1, NOS3, ROCK2, FIS1, DYNLL1, HP, DSTN, DLD, ALDH2, CLIC4, AKR1B1, TXN, DNM1L, (C3, OPA1, SORBS2, STAT3), (SLK, SDHA, MTOR, COX4I1)
Cell Cycle ARL8B, CUL5, PPP2CA, CUL4A, CUL1, DDX3X, LIPE, LOC643751, ROCK2, DSTN, PPM1A, TXN, MARCKS (includes EG:4082), PLA2G16, ALOX15, ACACB, NRAS, CFL1, RRAD, DDB1, FIS1, PPP2CB, SIRT2, AKR1B1, MAP4, CAPN2, DNM1L, (GNAI2, STAT4, GNAS, C3, OPA1, MAP2K3, PIN1, STAT3, STAT1, LOC643751, YWHAE, NPEPPS, ELAVL1), (MTOR, PPP2R2A, GRB2, PPP3CA, SOD1, SOD2)
Cellular Assembly and Organization RAB1A, RAB12, RAB2A, APOA1, ATP2A1, SH3GLB1, LIPE, INPPL1, RAB5B, LOC643751, NOS3, ROCK2, GNB1, DYNLL1, HK2, CADPS, RAB5C, EHD2, DSTN, ARL1, DNAJA3, SLC9A3R2, TXN, MARCKS (includes EG:4082), EHD1, RAB3A, CFL1, MAP4, HSPB1, SELENBP1, CLIC4, RAB5A, RAB7A, PCYT1A, FIS1, ARF1, CAPNS1, ARF3, CAPN1, SAR1A, GNAO1, EEF1A1, TPP1, DNM1L, RAB6A, (LRBA, C3, SEC23IP, YWHAZ, BASP1, STAT3, LOC643751, IQGAP1, GNAI2, GNAS, SERPINC1, NOL3, LPIN1, RHOG, OPA1, SORBS2, PIN1, NFS1, YWHAG, TNS1), (HK1, MTOR, PLS3, GRB2, PPP3CA, SOD1, SOD2)
Cell Morphology EHD1, NRAS, RAB1A, CFL1, RRAD, ATP2A1, SH3GLB1, LIPE, NOS3, LOC643751, ROCK2, FIS1, HK2, FLNC, MARCKS (includes EG:4082), GPX4, CLIC4, HSPB1, MAP4, DNM1L, (SEC23IP, YWHAZ, BASP1, STAT3, LOC643751, IQGAP1, STAT4, GNAS, SERPINC1, LPIN1, NOL3, RHOG, PRKAA1, OPA1, SORBS2, MAP2K3, PIN1, NFS1,YWHAE, YWHAG, CRIP2, TNS1), (HK1, MTOR, GRB2, SOD1, SOD2)
Cellular Movement CUL5, APOA1, MYLK3, LIPE, DDX3X, NOS3, LOC643751, HNRNPK, ROCK2, TGM2, DNAJA3, FGB, MGLL, SLC9A3R2, TXN, MARCKS (includes EG:4082), EHD1, NRAS, RAB21, SLC9A3R1, CFL1, CD36, RAP1A, PLA2G6, HP, CAPNS1, RRAS2, CAPN1, GNAO1, CAPN2, AKR1B1, CLIC4, HSPB1, NDRG2, NME2,FGA, (GNAI2, GNAS, SERPINC1, C3, RHOG, MAP2K3, PIN1, STAT3, IQGAP1, LOC643751, STAT1, TNS1)
Cell Death/Survival CUL5, QKI, APOA1, PPP2CA, CUL4A, CUL1, ATP2A1, BAG3, SH3GLB1, LIPE, DDX3X, INPPL1, NOS3, LOC643751, ROCK2, CIAPIN1, GNB1, TGM2, DYNLL1, HK2, PRKAA2, DNAJA3, SLC9A3R2, PPM1A, TXN, GPX4, RHEB, PLA2G16, ALOX15, NRAS, CD36, SIRT3, PFKM, PPP2CB, PLA2G6, FIS1, PPP2R1A, TUBA1A, CAPNS1, RRAS2, SIRT2, CAPN1, GNAO1, EEF1A1, TPP1, CLIC4, MAP4, UBA1 HSPB1, AKR1B1, ALDH2, MAP4, NME2, PRDX5, SELENBP1, UBA1, MSRAD, NM1L, (SDHB, C3, YWHAZ, STAT3, LOC643751, ELAVL1, STAT4, GNAS, SERPINC1, NOL3, PRKAA1, OPA1, MAP2K3, SORBS2, PIN1, STAT1), (SDHA, SLK, HK1, MTOR, GFPT1, PPP2R2A, GRB2, BAT3, PPP3CA, SOD1, SOD2)
Cellular Development EHD1, ALOX15, NRAS, RRAD, LIPE, NOS3, LOC643751, ROCK2, FIS1, PLA2G6, PPP2R1A, SIRT2, FLNC, PPM1A, MARCKS (includes EG:4082), ALDH6A1, CLIC4, NME2, SELENBP1, NDRG2, UBA1, AKR1B1, FGA, (STAT4, GNAS, LPIN1, C3, BASP1, MAP2K3, PIN1, STAT3, STAT1, LOC643751, FABP4, Ube2n, FABP4, YWHAG, ELAVL1), (MTOR, GRB2, SOD1, SOD2)
Cellular Growth and Proliferation RAB1A, PRKAB1, PPP2CA, APOA1, CUL1, DDX3X, NOS3, LOC643751, HNRNPK, ROCK2, ARL1, DNAJA3, PPM1A, SLC9A3R2, TXN, GPX4, ALOX15, NRAS, SLC9A3R1, RRAD, PSME2, DDB1, DYNC1H1, PLA2G6, ARF1, PPP2R1A, PSMC1, CAPNS1, SIRT2, CAPN1, PSMD2, NME2, NDRG2, AKR1B1, UBA1, GNAO1, (STAT4, SERPINC1, RHOG, LPIN1, C3, PRKAA1, MAP2K3, STAT3, PIN1, STAT1, LOC643751, ELAVL1), (HK1, MTOR, GRB2, PSMC3, PPP3CA, SOD1, SOD2)
Post-Translational Modification CUL5, APOA1, PPP2CA, CUL1, CD36, PPP1CB, SH3GLB1, SIRT3, TTC1, NOS3, DDB1, PPP2CB, PPP2R1A, UGGT1, SIRT2, CAPN1, DNAJA3, CAPN2, PPM1A, ALDH2, MSRA, TXN, (CAND1, FAM129A, UBE2D2, YWHAZ, STAT1, TCEB1), (SLK, ADSL, HK1, GFPT1, MTOR, ERP44, PPP2R2A, PPP3CA, SOD1, SOD2)
Protein Folding UGGT1, DNAJA3, SH3GLB1, TXN, TTC1
Protein Synthesis ALOX15, PRKAB1, PRKAG1, PFKM, TGM2, HBB (includes EG:3043), CAPNS1, CAPN1, PRKAA2, DLD, TPP1, CAPN2, HSPB1, CLIC4, NME2, LONP1, (KIAA0368, UBE2D2, MAP2K3, UBE2D3 (includes EG:66105)), (ADSL, GFPT1, MTOR, ERP44, GRB2, PSMC4, PSMC2, SOD1, SOD2)
Protein Degradation ALOX15, CAPNS1, CAPN1, DLD, TPP1, CAPN2, LONP1, (KIAA0368, UBE2D2, UBE2D3 (includes EG:66105)), (MTOR, PSMC4, PSMC2, SOD1, SOD2)

Normal: proteins identified both in BI-occupied and Cz-occupied β2ARr•HDL pull-downs.

(Italic): proteins identified in BI-occupied β2ARr•HDL pull-downs. (Bold): proteins identified in Cz-occupied β2AR•rHDL pull-downs.