Table 2.
Number of mapped reads
| Sample | Total filtered reads | Exon | % | Intron | % | Intergenenic | % |
|---|---|---|---|---|---|---|---|
| F12 |
75,780,826 |
40,030,725 |
52.82 |
1,609,267 |
2.12 |
3,060,859 |
4.04 |
| R12 |
71,254,122 |
52,078,194 |
73.09 |
1,796,654 |
2.52 |
3,890,885 |
5.46 |
| X12 |
79,939,758 |
40,222,370 |
50.32 |
1,745,087 |
2.18 |
3,398,300 |
4.25 |
| F34 |
50,520,686 |
36,079,475 |
71.42 |
1,301,039 |
2.58 |
2,746,963 |
5.44 |
| R34 |
52,582,652 |
37,388,453 |
71.10 |
1,487,063 |
2.83 |
2,974,902 |
5.66 |
| X34 |
61,330,602 |
43,101,722 |
70.28 |
1,533,592 |
2.50 |
3,273,276 |
5.34 |
| Total | 391,408,646 | 248,900,939 | 63.59 | 9,472,702 | 2.42 | 19,345,185 | 4.94 |
R, X, and F denote R9308, Xieqingzao B, and Xieyou 9308, respectively. Numbers 12 and 34 denote samples from roots at tillering and heading stages, respectively.