Table 3.
Effect of 4′-substituents on the decarboxylation reactions of the truncated substrates EO and FEO catalyzed by yeast OMPDC at 25 °C.
| Substrate | 4′-Substituent | Effect of 4′-Substituent | ΔΔG‡ (kcal/mol) |
|---|---|---|---|
| EO | CH2OPO32− | + 4.2 × 108-fold a | −11.7 |
| FEO | CH2OPO32− | + 1.2 × 106-fold a | −8.3 |
| EO | CH2OH | −140-fold b | +2.9 |
| EO + HPO32− | CH2OH | −1.3 × 106-fold c | +8.3 |
| FEO | CH3 | −130-fold b | +2.9 |
| FEO + HPO32− | CH3 | −3000-fold c | +4.7 |
Calculated from the values of kcat/Km for the decarboxylation of OMP (1.1 × 107 M−1 s−1, Ref. 7) and FOMP (1.2 × 107 M−1 s−1, Ref. 27) at pH 7.1 and I = 0.105 (NaCl) and the values of (kcat/Km)E in Table 1 for the decarboxylation of EO and FEO at pH 7.0 and I = 0.14 (NaCl).
Calculated from the values of (kcat/Km)E in Table 1 for the unactivated decarboxylation reactions of EO, orotidine, FEO, and 5′-dFO at pH 7.0 or pH 7.1 (for orotidine) and I = 0.14 (NaCl).
Calculated from the values of (kcat/Km)E·Hpi/Kd in Table 1 for the phosphite-activated decarboxylation reactions of EO, FEO, and 5′-dFO at pH 7.0 and I = 0.14 (NaCl) and the reaction of orotidine at pH 7.1 and I = 0.21 (NaCl).