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. 2012 Dec 31;24(12):4793–4805. doi: 10.1105/tpc.112.108068

Figure 5.

Figure 5.

LD Visualization.

The LD is shown for a specific region with 500 SNPs. The triangle plot below (B) the gene annotation panel shows the r2 values for the 500 SNPs. Only r2 values above a certain threshold (0.3) are color coded, ranging from yellow (low) to red (high).