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. 2013 Jan 3;110(4):E295–E304. doi: 10.1073/pnas.1213892110

Table 3.

Genes and functions of region 2

Protein Gene name No. of amino acids Proposed function Organism Identity/ similarity (I/S) (%) Accession number
TERTU_2188 TERTU_2188 519 Transposase Cellvibrio japonicus 68/81 YP_001983638.1
TERTU_2189 TERTU_2189 62 Hypothetical protein
TERTU_2190 TERTU_2190 68 Hypothetical protein Saccharophagus degradans 49/63 YP_526685.1
TERTU_2191 TERTU_2191 171 Hypothetical protein Saccharophagus degradans 66/78 YP_526685.1
TERTU_2193 TERTU_2193 234 ACP phosphodiesterase Idiomarina loihiensis 86/94 YP_155995.1
TERTU_2194 TERTU_2194 290 Transcription regulator LysR Marinobacter adhaerens 80/91 ADP97201.1
TERTU_2195 TERTU_2195 549 Peptidase Plesiocystis pacifica 39/55 ZP_01910797.1
TERTU_2198 trtA 196 Acyltransferase (GNAT) Burkholderia thailandensis 46/69 ZP_05587728.1
TERTU_2199 trtB 287 Acyltransferase Streptomyces cattleya 47/62 CCB76280.1
TERTU_2200 trtC 236 Lipoprotein/enoyl CoA isomerase hydratase Actinosynnema mirum 43/61 YP_003099559.1
TERTU_2202 trtD 4,539 PKS-Hyd-KR-FkbH-ACP-KS1-DH-KR-ACP-KS2-KR-ACP-KS3 Bacillus amyloliquefaciens 35/50 YP_001421792.1
TERTU_2203 trtE 4,947 PKS-DH-ACP-KS4-KR-ACP-KS5-ACP-KS6-KR-ACP-KS7-ACP-KS8 Clostridium cellulolyticum 29/47 YP_002505214.1
TERTU_2204 trtF 4,663 PKS-KR-ACP-KS9-DH-KR-MT-ACP-KS10-ACP-KS11-ACP-TE Paenibacillus polymyxa 30/47 YP_003871371
TERTU_2205 trtG 377 Oxygenase Dickeya dadantii 44/64 YP_002988660.1
TERTU_2206 trtH 268 Thioesterase Xenorhabdus bovienii 31/51 YP_003468018.1
TERTU_2207 trtI 455 Dioxygenase Pseudomonas fluorescens 56/72 AAM12912.1
TERTU_2208 trtJ 151 Polyketide cyclase Acidithiobacillus ferrivorans 35/55 ZP_08490092.1
TERTU_2209 TERTU_2209 51 Hypothetical
TERTU_2211 TERTU_2211 486 Glycoside hydrolase Sorangium cellulosum 61/75 YP_001617495.1
TERTU_2212 TERTU_2212 378 Transcription regulator AraC Saccharophagus degradans 33/54 YP_527963.1

Size, proposed functions, source of closest homologs, and their accession number and percentage of identity and similarity are determined. AT, acyltransferase; DH, dehydratase; GNAT, Gcn 5-N-acetyl transferase; ACP, acyl carrier protein; KS, ketosynthase; KR, ketoreductase; MT, methyl transferase; PKS, polyketide synthase; R, enoyl reductase; TE, thioesterase.