Table 1.

PIP results on simulated data

	Reconstruction accuracy
Tree resampled?	No	Yes	No	Yes
MSA resampled?	No	No	Yes	Yes
Edge recall (SP)	0.25	—	0.22	0.24
Edge Precision	0.22	—	0.56	0.58
Edge F1	0.23	—	0.31	0.32
Partition Metric	0.24	0.22	—	0.19
Robinson-Foulds	0.45	0.38	—	0.33

Reconstruction accuracy using five different metrics. The bold font highlights the best-performing combination of resampling for each row.