Table 2.
Top Ranked SNPs Associated with the FTND in the Treatment Seeking Smoker Cohort
SNP | Gene | Genomic1 | Major2 | Minor3 | MAF4 | Model5 | Beta6 | SE7 | PLRT8 | PACT9 |
---|---|---|---|---|---|---|---|---|---|---|
rs10891552 | DRD2 | IVS1+12127 | A | T | 0.04 | Add | 0.87 | 0.27 | 0.0014 | 0.037 |
rs2975226 | SLC6A3 | −2303 | T | A | 0.39 | Add | 0.31 | 0.10 | 0.0029 | 0.057 |
rs2652510 | SLC6A3 | −4547 | T | C | 0.40 | Dom | 0.45 | 0.15 | 0.0026 | 0.081 |
rs834829 | NR4A2 | −14150 | G | A | 0.29 | Dom | 0.37 | 0.15 | 0.0117 | 0.091 |
rs2652511 | SLC6A3 | −3076 | G | A | 0.39 | Dom | 0.44 | 0.15 | 0.0033 | 0.097 |
Genomic, location of SNP relative to gene.
Major, major or referent allele.
Minor or variant allele.
MAF, minor allele frequency.
Models are Additive (Add) and Dominant (Dom).
Coefficient of genotype term of GLM model. A positive value implies association of the minor allele with increased FTND.
SE, standard error of Beta.
Likelihood ratio test P value.
P value adjusted for correlated tests.