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. 2011 Jan-Mar;3(1):11–18.

Table 1.

List of used primers and PCR conditions

Primer name Sequence Enzyme site Fragment length PCR conditions
F-COL1A2 5′GGTACCCAGTATGATGGAAAAGGAGTTGG3′ KpnI 3120 Annealing: 60°C
R-COL1A2 5′AGATCTAGCCCTGTAGAAGTCTCCATC3′ BglII Extension: 6 min 10 s
F-COL1A1 5′GAATTCCAGCTGTCTTATGGCTATG3′ EcoRI 3183 Annealing: 68°C
R-COL1A1 5′AGATCTAGCCCGGTAGTAGCG3′ BglII Extension: 6 min 20 s
F-Amp 5′AGATCTTATATATGAGTAAACTTGGTCTGACAG3′ BglII 923 Annealing: 45°C
R-Amp 5′AGATCTAATAATATTGAAAAAGGAAGAGTATG3′ BglII Extension: 120 s
F-Oligo 5′TCGAGAAAAGAGAGGCTGAAGCTGGTACCTTT3′ XhoI
R-Oligo 5′CTAGAAAGGTACCAGCTTCAGCCTCTCTTTTC3′ XbaI
F-Backbone 5'AATCTTAAGCACGTCCGACGGCGGCCC 3' AflII 4120 Annealing: 68°C
R-Backbone 5'ATTAGCTAGCGGTTTAGTTCCTCACCTTGTCGTATTATACTATGC3' NheI Extension: 4 min 20 s
F-Hygro 5'ATTAGCTAGCATGAAAAAGCCTGAACTCA 3' NheI 1126 Annealing: 56°C
R-Hygro 5'ATACTTAAGCTATTCCTTTGCCCTCG 3' AflII Extension: 65 s