Table 2.
Nucleotide composition of Bursaphelenchus xylophilus (Bx) and Pratylenchus vulnus (Pv)
|
Nucleotide |
Length (bp) |
A (%) |
C (%) |
T (%) |
G (%) |
A+T (%) |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bx | Pv | Bx | Pv | Bx | Pv | Bx | Pv | Bx | Pv | Bx | Pv | |
| Entire sequence |
14778 |
21656 |
31.8 |
31.8 |
5.4 |
9.8 |
51.7 |
42.1 |
11.1 |
16.3 |
83.5 |
73.9 |
| Protein coding sequence |
10182 |
10002 |
27.1 |
26.7 |
6.3 |
8.7 |
53.4 |
48.4 |
13.2 |
16.2 |
80.5 |
75.1 |
| Codon position |
|
|
|
|
|
|
|
|
|
|
|
|
| 1st |
3394 |
3334 |
28.5 |
27.6 |
6.6 |
9.0 |
46.8 |
43.0 |
18.1 |
20.4 |
75.3 |
70.6 |
| 2nd |
3394 |
3334 |
19.2 |
18.3 |
10.4 |
12.5 |
55.7 |
51.8 |
14.7 |
17.4 |
74.9 |
70.1 |
| 3rd |
3394 |
3334 |
33.5 |
34.4 |
1.9 |
4.4 |
57.7 |
50.3 |
6.8 |
10.9 |
91.2 |
84.7 |
| Ribosomal RNA gene sequence |
1648 |
1581 |
39.1 |
30.2 |
5.0 |
11.5 |
46.2 |
39.2 |
9.7 |
19.1 |
85.3 |
69.4 |
| Transfer RNA gene sequence |
1214 |
1216 |
39.1 |
35.0 |
4.9 |
6.9 |
45.6 |
42.2 |
10.5 |
16.0 |
84.7 |
77.2 |
| Non coding region | 1650 | 7748 | 47.7 | 37.4 | 0.7 | 11.3 | 51.0 | 35.5 | 0.7 | 15.8 | 98.7 | 72.9 |