Table 3.
Codon usage of 12 protein coding genes of Bursaphelenchus xylophilus (Bx) and Pratylenchus vulnus (Pv) mtDNAs
|
Codon |
AA |
No. |
% |
Codon |
AA |
No. |
% |
||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Bx | Pv | Bx | Pv | Bx | Pv | Bx | Pv | ||||
| TTT |
Phe |
649 |
483 |
19.12 |
14.49 |
TAT |
Tyr |
160 |
129 |
4.71 |
3.87 |
| TTC |
Phe |
18 |
38 |
0.53 |
1.14 |
TAC |
Tyr |
14 |
24 |
0.41 |
0.72 |
| TTA |
Leu |
459 |
377 |
13.52 |
11.31 |
TAA |
* |
0 |
0 |
0.00 |
0.00 |
| TTG |
Leu |
73 |
107 |
2.15 |
3.21 |
TAG |
* |
0 |
0 |
0.00 |
0.00 |
| CTT |
Leu |
26 |
46 |
0.77 |
1.38 |
CAT |
His |
46 |
45 |
1.36 |
1.35 |
| CTC |
Leu |
2 |
1 |
0.06 |
0.03 |
CAC |
His |
0 |
2 |
0.00 |
0.06 |
| CTA |
Leu |
12 |
33 |
0.35 |
0.99 |
CAA |
Gln |
30 |
30 |
0.88 |
0.90 |
| CTG |
Leu |
0 |
8 |
0.00 |
0.24 |
CAG |
Gln |
8 |
26 |
0.24 |
0.78 |
| ATT |
Ile |
260 |
188 |
7.66 |
5.64 |
AAT |
Asn |
146 |
99 |
4.30 |
2.97 |
| ATC |
Ile |
6 |
13 |
0.18 |
0.39 |
AAC |
Asn |
8 |
5 |
0.24 |
0.15 |
| ATA |
Met |
129 |
166 |
3.80 |
4.98 |
AAA |
Lys |
85 |
67 |
2.50 |
2.01 |
| ATG |
Met |
17 |
19 |
0.50 |
0.57 |
AAG |
Lys |
14 |
33 |
0.41 |
0.99 |
| GTT |
Val |
125 |
143 |
3.68 |
4.29 |
GAT |
Asp |
60 |
55 |
1.77 |
1.65 |
| GTC |
Val |
2 |
8 |
0.06 |
0.24 |
GAC |
Asp |
6 |
5 |
0.18 |
0.15 |
| GTA |
Val |
91 |
78 |
2.68 |
2.34 |
GAA |
Glu |
48 |
54 |
1.41 |
1.62 |
| GTG |
Val |
22 |
19 |
0.65 |
0.57 |
GAG |
Glu |
26 |
35 |
0.77 |
1.05 |
| TCT |
Ser |
85 |
90 |
2.50 |
2.70 |
TGT |
Cys |
33 |
41 |
0.97 |
1.23 |
| TCC |
Ser |
1 |
13 |
0.03 |
0.39 |
TGC |
Cys |
1 |
0 |
0.03 |
0.00 |
| TCA |
Ser |
29 |
38 |
0.85 |
1.14 |
TGA |
Trp |
50 |
59 |
1.47 |
1.77 |
| TCG |
Ser |
3 |
7 |
0.09 |
0.21 |
TGG |
Trp |
12 |
28 |
0.35 |
0.84 |
| CCT |
Pro |
49 |
41 |
1.44 |
1.23 |
CGT |
Arg |
25 |
16 |
0.74 |
0.48 |
| CCC |
Pro |
1 |
4 |
0.03 |
0.12 |
CGC |
Arg |
0 |
1 |
0.00 |
0.03 |
| CCA |
Pro |
16 |
28 |
0.47 |
0.84 |
CGA |
Arg |
3 |
13 |
0.09 |
0.39 |
| CCG |
Pro |
3 |
4 |
0.09 |
0.12 |
CGG |
Arg |
3 |
3 |
0.09 |
0.09 |
| ACT |
Thr |
67 |
62 |
1.97 |
1.86 |
AGT |
Ser |
89 |
86 |
2.62 |
2.58 |
| ACC |
Thr |
0 |
13 |
0.00 |
0.39 |
AGC |
Ser |
4 |
5 |
0.12 |
0.15 |
| ACA |
Thr |
18 |
30 |
0.53 |
0.90 |
AGA |
Ser |
103 |
95 |
3.03 |
2.85 |
| ACG |
Thr |
2 |
4 |
0.06 |
0.12 |
AGG |
Ser |
20 |
35 |
0.59 |
1.05 |
| GCT |
Ala |
61 |
53 |
1.80 |
1.59 |
GGT |
Gly |
77 |
101 |
2.27 |
3.03 |
| GCC |
Ala |
0 |
7 |
0.00 |
0.21 |
GGC |
Gly |
3 |
8 |
0.09 |
0.24 |
| GCA |
Ala |
14 |
20 |
0.41 |
0.60 |
GGA |
Gly |
51 |
58 |
1.50 |
1.74 |
| GCG | Ala | 5 | 4 | 0.15 | 0.12 | GGG | Gly | 24 | 31 | 0.71 | 0.93 |