Table 4.
Results of Shimodaira-Hasegawa ML test (RAxML) for comparisons of alternative tree topologies to the best ML tree (Figure2) based on all nucleotide data (11,784 characters) and partitioned (by gene) analysis
| Phylogenetic hypothesis | Difference in -lnL | S.D. | P value significant (0.01) |
|---|---|---|---|
| Constrained monophyly |
|
|
|
| 1. Tylenchomorpha |
93 |
30 |
yes |
| 2. Tylenchoidea + Diplogasteromorpha |
216 |
27 |
yes |
| 3. Aphelenchoididae + Diplogasteromorpha |
105 |
26 |
yes |
| 4. Oxyuridomorpha + Tylenchoidea | 54 | 15 | yes |
Alternative topologies tested are provided in Additional file 5.