Skip to main content
. Author manuscript; available in PMC: 2014 Feb 5.
Published in final edited form as: J Phys Chem B. 2012 Aug 17;116(34):10145–10164. doi: 10.1021/jp3015047

Table V.

Summary of simulations for Model-1: set-2. A horizontal line differentiates the productive simulations from the unproductive ones. A higher kinetic energy is essential to overcome the hydrogen bond constraint. As in Set-1, the increase in average kinetic energy of the system supports greater propensity for a productive simulation. The transition point in this respect appears to be between 36.98 and 38.32 kcal/mol (higher than that for Set-1). Also note that the system potential energy is higher (and hence less stable) for the unproductive simulations here.

System Nuclear Kinetic Energy (Average ± RMS) System Potential Energya (Average ± RMS) Hydrogen Transfer?

Kelvinb kcal/mol kcal/mol

235.15 ± 40.47 34.35 ± 5.91 38.83 ± 9.74 No
239.95 ± 43.25 35.05 ± 6.32 40.88 ± 10.31 No
250.31 ± 51.06 36.56 ± 7.46 40.45 ± 10.29 No
251.47 ± 53.96 36.73 ± 7.88 40.51 ± 10.24 No
253.08 ± 47.81 36.96 ± 6.98 41.74 ± 10.85 No
253.08 ± 45.29 36.96 ± 6.62 39.78 ± 10.12 No
253.18 ± 58.35 36.98 ± 8.52 39.86 ± 10.26 No

262.37 ± 51.25 38.32 ± 7.49 35.76 ± 10.01 Yes
264.96 ± 65.51 38.70 ± 9.57 35.89 ± 8.88 Yes
274.02 ± 85.98 40.02 ± 12.56 38.42 ± 9.85 Yes
a

Potential energy change during the simulation. As already noted in Table IV, the unproductive simulations have a higher potential energy compared to the productive ones. In addition, the productive simulations here have an average potential energy that is roughly 10–13 kcal/mol higher as compared to the ones in Table IV. These aspects are also witnessed in Fig. 13ii.

b

Computed from the nuclear kinetic energy using the equipartition theorem (3/2(N−1)kT).