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. 2013 Jan 30;3:844. doi: 10.1038/srep00844

Figure 12. Analysis of MD trajectories generated by Gromacs.

Figure 12

Trajectories for (a) protein solvent accessible surface area (SASA), (b) ligand SASA, (c) protein radius of gyration (Rg), (d) ligand Rg, (e) protein mean square deviation (MSD), (f) ligand MSD, (g) protein root mean square deviation (RMSD), and (h) ligand RMSD are shown. Data for (9Z)-1-(5-pyridin-2-yl-1,3,4-oxadiazol-2-yl)octadec-9-en-1-one, guineensine, and Retrofractamide A are shown in mint, blue, and violet, respectively.