Table 1. Classification and general features of Oscillibacter valericigenes Sjm18-20T.
MIGS ID | Property | Term | Evidence codea |
---|---|---|---|
Domain Bacteria | TAS [9] | ||
Phylum Firmicutes | TAS [10-12] | ||
Class Clostridia | TAS [13,14] | ||
Current classification | Order Clostridiales | TAS [15,16] | |
Family Oscillospiraceae | NAS [15,17] | ||
Genus Oscillibacter | TAS [18] | ||
Species Oscillibacter valericigenes | TAS [1] | ||
Type strain Sjm18-20 | TAS [1] | ||
Gram stain | negative | TAS [1] | |
Cell shape | straight or slightly curved rods | TAS [1] | |
Motility | oscillatory motility by peritrichous flagella | TAS [1] | |
Sporulation | non-sporulating | TAS [1] | |
Temperature range | 15-35°C | TAS [1] | |
Optimum temperature | 30°C | TAS [1] | |
Carbon source | yeast extract, polypeptone | TAS [1] | |
Energy source | heterotrophic | TAS [1] | |
Terminal electron receptor | |||
MIGS-6 | Habitat | alimentary canal of Japanese corbicula clam (Corbicula japonica) | TAS [1] |
MIGS-6.3 | Salinity | 0-4% NaCl (no growth in 6%) | TAS [1] |
MIGS-22 | Oxygen | strictly anaerobic | TAS [1] |
MIGS-15 | Biotic relationship | free-living | NAS |
MIGS-14 | Pathogenicity | none | NAS |
MIGS-4 | Geographic location | sea coast in Shimane Pref., Japan | TAS [1] |
MIGS-5 | Sample collection time | November 10, 2004 | NAS |
MIGS-4.1 | Latitude | ||
MIGS-4.2 | Longitude | NAS | |
MIGS-4.3 | Depth | NAS | |
MIGS-4.4 | Altitude | NAS |
a) Evidence codes - TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [19].