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. Author manuscript; available in PMC: 2013 Jan 30.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov;9(6):1607–1620. doi: 10.1109/TCBB.2012.126

TABLE 1.

Comparison of FEM and DEM modeling frameworks.

1) Cellular architecture is discrete

FEM DEM
± Representation of discrete tensegrity structure unclear + Can represent discrete tensegrity structure
+ Can be combined with DEM as a hybrid model To keep computations tractable, number of components per cell is limited to a lumped version of the real cell layout

2) Anisotropy also depends on cell geometry and network topology

FEM DEM
+ Finite elements can be adapted to cellular geometry + Discrete elements can be adapted to cellular geometry
± Incorporation of anisotropy of actin accumulation bundles to be understood + Anisotropy of actin accumulation bundles can easily be incorporated
Computational issues related to modeling large scale cellular networks + Can scale to model large cellular networks and thus encompass their topological features

3) Nonlinear and temporal mechanical characteristics

FEM DEM
+ Can be incorporated in finite elements + Can be incorporated in discrete elements
May lead to heavy computations, even for average-sized cellular network + Nonlinear elasticity qualitatively resembles tissue deformation
+ Nonlinear elasticity contributes to model stability, prevents collapse
Temporal characteristics can be computationally demanding

4) Volume preservation

FEM DEM
+ Can be imposed through volumetric properties ± Its effect can be approximated but not formally embedded
± May result in artifacts and computational issues (stiffness), due to limited knowledge on properties of cell height Approximation likely related to introduction of dynamical artifacts, requires evaluation of resulting mechanical properties