Table 2. Description of DENV virus strains analyzed, Queensland, Australia, 2002–2010*.
| Serotype/sequence name | Geographic origin | Year isolated | GenBank accession no. |
|---|---|---|---|
| DENV-1 | |||
| Bali 2003 | Bali | 2003 | JN415488 |
| Bali 2010a | Bali | 2010 | JN415489 |
| Bali 2010b | Bali | 2010 | JN415490 |
| Bali 2010c | Bali | 2010 | JN415491 |
| Bali 2010d | Bali | 2010 | JN415492 |
| Bali 2010e | Bali | 2010 | JN415493 |
| Bali 2010f | Bali | 2010 | JN415494 |
| Cairns 2003 | Cairns, Australia | 2003 | JN415495 |
| Cambodia 2007 | Cambodia | 2007 | JN415496 |
| Cook Islands 2002 | Cook Islands | 2002 | JN415497 |
| Cook Islands 2006 | Cook Islands | 2006 | JN415498 |
| East Timor 2000 | Timor-Leste | 2000 | JN415499 |
| East Timor 2008 | Timor-Leste | 2008 | JN415500 |
| East Timor 2009 | Timor-Leste | 2009 | JN415501 |
| East Timor 2010 | Timor-Leste | 2010 | JN415502 |
| Fiji 2002 | Fiji | 2002 | JN415503 |
| Fiji 2006a | Fiji | 2006 | JN415504 |
| Fiji 2006b | Fiji | 2006 | JN415505 |
| Guyana 2008 | Guyana | 2008 | JN415506 |
| India 2008 | India | 2008 | JN415507 |
| India 2010 | India | 2010 | JN415486 |
| Indonesia 2010a | Indonesia | 2010 | JN415508 |
| Indonesia 2010b | Indonesia | 2010 | JN415510 |
| Jakarta 2004 | Jakarta | 2004 | AY858983† |
| Laos 2007 | Laos | 2007 | JN415509 |
| Malaysia 1972 | Malaysia | 1972 | AF425622† |
| Malaysia 2005 | Malaysia | 2005 | JN415511 |
| Malaysia 2008 | Malaysia | 2008 | JN415512 |
| Malaysia 2010 | Malaysia | 2010 | JN415513 |
| Mareeba 2003 | Mareeba, Australia | 2003 | JN415514 |
| Palau 2000 | Palau | 2000 | JN415515 |
| Philippines 2005 | The Philippines | 2005 | JN415516 |
| Philippines 2010 | The Philippines | 2010 | JN415517 |
| PNG 2003 | Papua New Guinea | 2003 | JN415518 |
| PNG 2009 | Papua New Guinea | 2009 | JN415519 |
| Samoa 2001 | Samoa | 2001 | JN415520 |
| Singapore 2003 | Singapore | 2003 | FJ469907† |
| Singapore 2005 | Singapore | 2005 | EU081246† |
| Singapore 2005 | Singapore | 2005 | EU081247† |
| Singapore 2008 | Singapore | 2008 | JN415521 |
| Solomon Islands 2002 | Solomon Islands | 2002 | JN415522 |
| Southeast Asia 2007 | Southeast Asia | 2007 | JN415523 |
| Southeast Asia 2005 | Southeast Asia | 2005 | JN415529 |
| Sri Lanka 2004 | Sri Lanka | 2004 | JN415524 |
| Sumatra 1998 | Sumatra | 1998 | AB189121† |
| Thailand 1954 | Thailand | 1954 | D10513† |
| Thailand 1980 | Thailand | 1980 | AY732474† |
| Thailand 2001 | Thailand | 2001 | JN415525 |
| Thailand 2008a | Thailand | 2008 | JN415526 |
| Thailand 2008b | Thailand | 2008 | JN415527 |
| Thailand 2010 | Thailand | 2010 | JN415528 |
| Tonga 2008 | Tonga | 2008 | JN415530 |
| Townsville 2008 | Townsville, Australia | 2008 | JN415531 |
| Townsville 2009 | Townsville, Australia | 2009 | JN415532 |
| Venezuela 2007 | Venezuela | 2007 | EU482609† |
| Vietnam 2006 | Vietnam | 2006 | JN415533 |
| Vietnam 2006 | Vietnam | 2006 | EU482818† |
| Vietnam 2008a | Vietnam | 2008 | JN415534 |
| Vietnam 2008b | Vietnam | 2008 | JN415535 |
| Vietnam South 2008 | Vietnam | 2008 | GU131812† |
| Vietnam 2010 | Vietnam | 2010 | JN415487 |
| Yap Island 2004 | Yap Island | 2004 | AB204803† |
| DENV-2 | |||
| Bali 2009 | Bali | 2009 | JN568242 |
| Bali 2010 | Bali | 2010 | JN568243 |
| Borneo 2009 | Borneo | 2009 | JN568247 |
| Brunei 2005 | Brunei | 2005 | EU179858† |
| Cairns 2003a | Cairns, Australia | 2003 | JN568248 |
| Cairns 2003b | Cairns, Australia | 2003 | JN568249 |
| Cairns 2004 | Cairns, Australia | 2004 | JN568250 |
| Cairns 2006 | Cairns, Australia | 2006 | JN568251 |
| Cairns 2008 | Cairns, Australia | 2008 | JN568252 |
| Cairns 2010 | Cairns, Australia | 2010 | JN568253 |
| Cambodia 2003 | Cambodia | 2003 | GQ868621† |
| Cambodia 2008 | Cambodia | 2008 | GU131924† |
| China 2001 | China | 2001 | EF051521† |
| East Timor 2000 | Timor-Leste | 2000 | JN568254 |
| East Timor 2002 | Timor-Leste | 2002 | JN568255 |
| East Timor 2004 | Timor-Leste | 2004 | JN568256 |
| East Timor 2010 | Timor-Leste | 2010 | JN568257 |
| India 2001 | India | 2001 | DQ448237† |
| India 2009 | India | 2009 | JN568258 |
| India 2003 | India | 2003 | JN568260 |
| India 2010 | India | 2010 | JN568259 |
| Indonesia 2004 | Indonesia | 2004 | AY858035† |
| Kuranda 2002 | Kuranda, Australia | 2002 | JN568261 |
| Laos 2010 | Laos | 2010 | JN568244 |
| Mt Isa 2010 | Mt Isa, Australia | 2010 | JN568262 |
| New Guinea C 1944 | New Guinea | 1944 | AF038403† |
| Peru 1996 | Peru | 1996 | IQT1797† |
| Philippines 2003 | The Philippines | 2003 | JN568263 |
| Philippines 2010a | The Philippines | 2010 | JN568264 |
| Philippines 2010b | The Philippines | 2010 | JN568265 |
| PNG 2003 | PNG | 2003 | JN568266 |
| PNG 2009 | PNG | 2009 | JN568241 |
| PNG 2010a | PNG | 2010 | JN568267 |
| PNG 2010b | PNG | 2010 | JN568268 |
| PNG 2010c | PNG | 2010 | JN568269 |
| PNG 2010d | PNG | 2010 | JN568270 |
| Singapore 2008 | Singapore | 2008 | GU370051† |
| Southeast Asia 2010b | Southeast Asia | 2010 | JN568276 |
| Southeast Asia 2010a | Southeast Asia | 2010 | JN568277 |
| Sri Lanka 1996 | Sri Lanka | 1996 | FJ882602† |
| Sumatra 2009 | Sumatra | 2009 | JN568271 |
| Sumatra 2010 | Sumatra | 2010 | JN568272 |
| Taiwan 2001 | Taiwan | 2001 | DQ645541† |
| Thailand 1996 | Thailand | 1996 | AF100459† |
| Thailand 2001 | Thailand | 2001 | DQ181797† |
| Thailand 2007 | Thailand | 2007 | JN568273 |
| Thailand 2010a | Thailand | 2010 | JN568274 |
| Thailand 2010b | Thailand | 2010 | JN568275 |
| Thailand 2010c | Thailand | 2010 | JN568245 |
| Torres Strait 2003 | Torres Strait, Australia | 2003 | JN568278 |
| Townsville 1993 | Townsville, Australia | 1993 | AY037116† |
| Townsville 2010a | Townsville, Australia | 2010 | JN568279 |
| Townsville 2010b | Townsville, Australia | 2010 | JN568246 |
| Tully 2010 | Tully, Australia | 2010 | JN568280 |
| Venezuela 1990 | Venezuela | 1990 | GQ868540† |
| Vietnam 2005 | Vietnam | 2005 | FM210207† |
| Vietnam 2006 | Vietnam | 2006 | EU569721† |
| Vietnam 2010a | Vietnam | 2010 | JN568281 |
| Vietnam 2010b | Vietnam | 2010 | JN568282 |
| DENV-3 | |||
| Bali 2009 | Bali | 2009 | JN568284 |
| Bali 2010a | Bali | 2010 | JN568283 |
| Bali 2010b | Bali | 2010 | JN575560 |
| Bali 2010c | Bali | 2010 | JN575561 |
| Cairns 1998 | Cairns, Australia | 1998 | JN575562 |
| Cairns 2008a | Cairns, Australia | 2008 | JN575563 |
| Cairns 2008 | Cairns, Australia | 2008 | JN575564 |
| Cambodia 2006 | Cambodia | 2006 | JN575565 |
| East Timor 2000 | Timor-Leste | 2000 | JN575566 |
| Fiji 1992 | Fiji | 1992 | L11422† |
| India 1984 | India | 1984 | L11424† |
| Indonesia 1985 | Indonesia | 1985 | L11428† |
| Indonesia 1998 | Indonesia | 1998 | AY265857† |
| Indonesia 2004a | Indonesia | 2004 | AY858037† |
| Indonesia 2004b | Indonesia | 2004 | AY858047† |
| Indonesia 2008a | Indonesia | 2008 | JN575567 |
| Indonesia 2008b | Indonesia | 2008 | JN575568 |
| Philippines 1983 | The Philippines | 1983 | L11432† |
| Philippines 1997 | The Philippines | 1997 | AY496879† |
| Philippines 2010 | The Philippines | 2010 | JN575570 |
| PNG 2008 | Papua New Guinea | 2008 | JN575571 |
| PNG 2010a | Papua New Guinea | 2010 | JN575572 |
| PNG 2010b | Papua New Guinea | 2010 | JN575573 |
| Puerto Rico 1977 | Puerto Rico | 1977 | L11434† |
| Samoa 1986 | Samoa | 1986 | L11435† |
| Singapore 2005 | Singapore | 2005 | EU081221† |
| Southeast Asia 2008 | Southeast Asia | 2008 | JN575569 |
| Sri Lanka 1991 | Sri Lanka | 1991 | L11438† |
| Tahiti 1989 | Tahiti | 1989 | L11619† |
| Taiwan 1998 | Taiwan | 1998 | DQ675532† |
| Taiwan 1999 | Taiwan | 1999 | DQ675533† |
| Thailand 1973 | Thailand | 1973 | L11620† |
| Thailand 1987 | Thailand | 1987 | L11442† |
| Thailand 1997a | Thailand | 1997 | JN575574 |
| Thailand 1997b | Thailand | 1997 | JN575575 |
| Thailand 2010 | Thailand | 2010 | JN575576 |
| Townsville 2006 | Townsville, Australia | 2006 | JN575577 |
| Townsville 2007 | Townsville, Australia | 2007 | JN575578 |
| Townsville 2009 | Townsville, Australia | 2009 | JN575579 |
| Vietnam 2007 | Vietnam | 2007 | EU482461† |
| Vietnam 2008 | Vietnam | 2008 | JN575580 |
| DENV-4 | |||
| Bali 2010 | Bali | 2010 | JN575583 |
| Brazil 1982 | Brazil | 1982 | U18425† |
| Cairns 2002 | Cairns, Australia | 2002 | JN575584 |
| China 2001 | China | 2001 | AF289029† |
| Cook Islands 2009 | Cook Islands | 2009 | JN575582 |
| Dominica 1981 | Dominica | 1981 | AF326573† |
| East Timor 2000 | Timor-Leste | 2000 | JN575585 |
| East Timor 2007 | Timor-Leste | 2007 | JN575586 |
| El Salvador 1983 | El Salvador | 1983 | U18426† |
| Fiji 2008 | Fiji | 2008 | JN575587 |
| Indonesia 1973 | Indonesia | 1973 | U18428† |
| Indonesia 1977 | Indonesia | 1977 | U18430† |
| Indonesia 2010a | Indonesia | 2010 | JN575588 |
| Indonesia 2010b | Indonesia | 2010 | JN575589 |
| Innisfail 2009 | Innisfail, Australia | 2009 | JN575581 |
| Jakarta 2004 | Jakarta | 2004 | AY858049† |
| Malaysia 2009 | Malaysia | 2009 | JN575590 |
| New Caledonia 1984 | New Caledonia | 1984 | U18432† |
| Philippines 1984 | The Philippines | 1984 | U18435† |
| Philippines 2004 | The Philippines | 2004 | JN575591 |
| Puerto Rico 1986 | Puerto Rico | 1986 | U18436† |
| Samoa 2008 | Samoa | 2008 | JN575592 |
| Solomon Islands 2008 | Solomon Islands | 2008 | JN575593 |
| Sri Lanka 1978 | Sri Lanka | 1978 | U18437† |
| Tahiti 1985 | Tahiti | 1985 | U18439† |
| Thailand 1978 | Thailand | 1978 | U18441† |
| Thailand 1984 | Thailand | 1984 | U18442† |
| Thailand 1997 | Thailand | 1997 | AY618988† |
| Thailand 2001 | Thailand | 2001 | AY618992† |
| Thailand 2010 | Thailand | 2010 | JN575594 |
| Torres Strait 2005 | Torres Strait, Australia | 2005 | JN575595 |
| Townsville 2005 | Townsville, Australia | 2005 | JN575596 |
*DENV, dengue virus; PNG, Papua New Guinea. †Sequences obtained from GenBank.