TABLE 1.
Intergenic regions containing the cis consensus sequencea bound by proteins from the CRP/FNR superfamily in S. coelicolor
| Geneb | Putative CRP-FNR cis sequence | Annotation (length in amino acids) |
|---|---|---|
| SCO2545 | GTATGTGACCTAGATCACATCA | Possible transmembrane efflux protein (449) |
| SCO3571 | ATCCTTGTGACAGATCACACTGTT | crp, probable transcriptional regulator (224) |
| SCO2914 | ACTGTGACGTGTCACACA | Probable amino acid permease (475) |
| SCO3945 | GTGAATGTGAACGCGTTCACAAGCGT | cydA, cytochrome oxidase subunit I (501) |
| SCO4280 | TTCGTTGTGACTTGAGTCACAAGGGG | Probable reductase (202) |
| SCO4281(c) | Hypothetical protein (533) | |
| SCO4562 | TTGGGCTTGTGACCTGCTTCACATGTTCGC | nuoA, NADH dehydrogenase subunit (119) |
| SCO4561(c) | Possible NLP/P60 family protein (277) | |
| SCO5029 | GATGTGAGCTTTCACACG | Possible secreted protein (238) |
| SCO5864 | GAGTCGCCTGTGTGATCGATCACAGCGGAGGCTT | Unknown (98) |
a
TGTGA-N4-6-TCACA.
b
(c), open reading frame on the complementary strand. Nucleotides shown in boldface are in the searched sequence, and those underlined form the palindrome.