Table 2.
A list of selected down-regulated genes and their functional categories
|
No |
Locus |
FC |
Gene ontology class |
Gene annotation detail |
|---|---|---|---|---|
| Carbohydrate adjustments | ||||
| 1 |
At5g49360 |
3.07 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
BXL1__BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds |
| 2 |
At2g19800 |
2.93 |
inositol oxygenase activity |
MIOX2__MIOX2 (MYO-INOSITOL OXYGENASE 2) |
| 3 |
At4g30280 |
2.82 |
glucan metabolic process |
ATXTH18_XTH18__ATXTH18/XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds |
| 4 |
At5g52050 |
2.49 |
drug transporter activity |
MATE efflux protein-related |
| 5 |
At1g02640 |
2.49 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
BXL2__BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds |
| 6 |
At1g23480 |
2.45 |
transferase activity, transferring glycosyl groups |
ATCSLA03_ATCSLA3_CSLA03__ATCSLA03 (Cellulose synthase-like A3); transferase, transferring glycosyl groups |
| 7 |
At3g27540 |
2.42 |
transferase activity, transferring glycosyl groups |
glycosyltransferase family 17 protein |
| 8 |
At3g06770 |
2.36 |
polygalacturonase activity |
glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein |
| 9 |
At1g10550 |
2.31 |
glucan metabolic process |
XET_XTH33__XTH33 (xyloglucan:xyloglucosyltransferase 33); hydrolase, acting on glycosyl bonds |
| 10 |
At1g10400 |
2.29 |
transferase activity, transferring glycosyl groups |
UDP-glycosyltransferase/transferase, transferring glycosyl groups |
| 11 |
At4g25810 |
2.24 |
glucan metabolic process |
XTR6_XTH23__XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds |
| 12 |
At1g23870 |
2.17 |
trehalose-phosphatase activity |
ATTPS9_TPS9__ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups/trehalose-phosphatase |
| 13 |
At1g12240 |
2.12 |
sucrose catabolic process, using beta-fructofuranosidase |
ATBETAFRUCT4_VAC-INV__ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/hydrolase, hydrolyzing O-glycosyl compounds |
| 14 |
At5g56870 |
2.09 |
beta-galactosidase activity |
BGAL4__BGAL4 (beta-galactosidase 4); beta-galactosidase |
| 15 |
At2g47930 |
2.06 |
anchored to membrane |
AGP26__AGP26/ATAGP26 (ARABINOGALACTAN PROTEINS 26) |
| 16 |
At4g30290 |
2.05 |
glucan metabolic process |
ATXTH19__ATXTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19); hydrolase, acting on glycosyl bonds |
| 17 |
At5g27350 |
2.04 |
sugar porter activity |
SFP1__SFP1; carbohydrate transmembrane transporter/sugar:hydrogen ion symporter |
| 18 |
At2g32540 |
2.02 |
polysaccharide biosynthetic process |
ATCSLB04_ATCSLB4_CSLB04__ATCSLB04 (Cellulose synthase-like B4); transferase/transferase, transferring glycosyl groups |
| 19 |
At3g62720 |
1.86 |
polysaccharide biosynthetic process |
ATXT1__ATXT1; transferase/transferase, transferring glycosyl groups |
| 20 |
At4g37800 |
1.77 |
glucan metabolic process |
xyloglucan:xyloglucosyltransferase, putative/xyloglucanendotransglycosylase, putative/endo-xyloglucantransferase, putative |
| 21 |
At1g11260 |
1.65 |
sugar porter activity |
STP1__STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/sugar:hydrogen ion symporter |
| 22 |
At1g75220 |
1.5 |
sugar porter activity |
integral membrane protein, putative |
|
Lipid metabolism | ||||
| 1 |
At4g22753 |
2.84 |
catalytic activity |
SMO1-3_ATSMO1_SMO1__SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE); catalytic |
| 2 |
At5g52050 |
2.49 |
drug transporter activity |
MATE efflux protein-related |
| 3 |
At1g17420 |
2.37 |
lipoxygenase activity |
LOX3__LOX3 (Lipoxygenase 3); iron ion binding/lipoxygenase/metal ion binding/oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| 4 |
At3g47560 |
2.27 |
catalytic activity |
esterase/lipase/thioesterase family protein |
| 5 |
At5g24150 |
2.22 |
sterol biosynthetic process |
SQP1__SQP1 (Squalenemonooxygenase 1) |
| 6 |
At3g23470 |
2.1 |
lipid biosynthetic process |
cyclopropane-fatty-acyl-phospholipid synthase |
| 7 |
At1g28600 |
1.94 |
lipid metabolic process |
lipase, putative |
| 8 |
At5g18630 |
1.93 |
lipid metabolic process |
lipase class 3 family protein |
| 9 |
At5g24210 |
1.92 |
lipid metabolic process |
lipase class 3 family protein |
| 10 |
At1g02660 |
1.79 |
lipid metabolic process |
lipase class 3 family protein |
| 11 |
At3g23510 |
1.77 |
lipid biosynthetic process |
cyclopropane fatty acid synthase, putative/CPA-FA synthase, putative |
| 12 |
At4g26790 |
1.73 |
lipid metabolic process |
GDSL-motif lipase/hydrolase family protein |
| 13 |
At2g42690 |
1.68 |
lipid metabolic process |
lipase, putative |
| 14 |
At1g28670 |
1.67 |
lipid metabolic process |
ARAB-1__ARAB-1 (Arabidopsis lipase); carboxylesterase |
| 15 |
At4g13050 |
1.55 |
fatty acid biosynthetic process |
acyl-(acyl carrier protein) thioesterase, putative/acyl-ACP thioesterase, putative/oleoyl-(acyl-carrier protein) hydrolase, putative/S-acyl fatty acid synthase thioesterase, putative |
| 16 |
At1g64400 |
1.5 |
fatty acid biosynthetic process |
long-chain-fatty-acid--CoA ligase, putative/long-chain acyl-CoA synthetase, putative |
|
Others | ||||
| 1 |
At1g12610 |
6.03 |
gibberellin biosynthetic process |
DDF1__DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding/transcription factor |
| 2 |
At2g37180 |
2.36 |
membrane |
RD28_PIP2;3_PIP2C__RD28 (plasma membrane intrinsic protein 2;3); water channel |
| 3 |
At3g30775 |
2.22 |
proline catabolic process |
PRODH_ERD5_ATPDH_ATPOX_AT-POX_PRO1__ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase |
| 4 |
At4g19420 |
2.03 |
carboxylic ester hydrolase activity |
pectinacetylesterase family protein |
| 5 |
At4g22200 |
1.95 |
regulation of membrane potential |
AKT2/3_AKT2_AKT3__AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding/inward rectifier potassium channel |
| 6 |
At5g21100 |
1.92 |
endomembrane system |
L-ascorbate oxidase, putative |
| 7 | At1g19670 | 1.59 | chlorophyllase activity | ATCLH1_ATHCOR1_CORI1__ATCLH1 (CORONATINE-INDUCED PROTEIN 1) |