Table 1.
Background information of selected strains/isolates of JEV referenced in this study
| Strains/isolates | Country and Year of isolation | Source | Genotype | GenBank Accession no. |
|---|---|---|---|---|
| Nakayama |
Japan, 1935 |
Human brain |
III |
U70413 |
| JaGAr01 |
Japan, 1959 |
Mosquito |
III |
AF069076 |
| JaoArS982 |
Japan, 1982 |
Mosquito |
III |
M18370 |
| Ishikawa |
Japan, 1998 |
Mosquito |
I |
AB051292 |
| JaNAr0102 |
Japan, 2002 |
Mosquito |
I |
AY377577 |
| Fu |
Australia,1995 |
Human |
II |
AF217620 |
| WTP-70-22 |
Malaysia ,1970 |
Mosquito |
II |
U70421 |
| PhAn1242 |
Philipines,1984 |
Pig serum |
III |
U70417 |
| Muar |
Malaysia, 1952 |
Human |
V |
HM596272 |
| 691004 |
Srilanka, 1969 |
Human |
III |
Z34097 |
|
H49778 |
Srilanka, 1987 |
Human |
III |
U70395 |
| DH20 |
Nepal, 1985 |
Human |
III |
U03690 |
| VN118 |
Vietnam, 1979 |
Mosquito |
III |
U70420 |
| K94P05 |
Korea, 1994 |
Mosquito |
I |
AF045551 |
| KV1899 |
Korea, 1999 |
Pig |
I |
AY316157 |
| K91P55 |
Korea, 1991 |
Mosquito |
I |
U34928 |
| GP78 |
India, 1978 |
Human |
III |
AF075723 |
| 733913 |
India, 1973 |
Human brain |
III |
Z34095 |
|
P20778 |
India, 1958 |
Human |
III |
Z34096 |
|
R53567 |
India, unavailable |
unavailable |
III |
U70418 |
| 782219 |
India, 1982 |
Human |
III |
U70402 |
| 826309 |
India, 1982 |
Human brain |
III |
U70403 |
|
R53567 |
India, unavailable |
unavailable |
III |
U70418 |
| 014178 |
India, 2001 |
Human blood |
III |
EF623987 |
| 04940-4 |
India, 2002 |
Mosquito |
III |
EF623989 |
| 057434 |
India, 2005 |
Human blood |
III |
EF623988 |
| 78124 |
India, 1978 |
Human |
III |
U70387 |
| JEV-GKP-0945054 |
India, 2009 |
Human CSF |
I |
HM156572 |
| P3 |
China, 1949 |
Mosquito |
III |
U47032 |
| SA14 |
China, 1958 |
Mosquito |
III |
U14163 |
| SA14-14-2 |
China, unavailable |
Vaccine |
III |
D90195 |
| GZ04-36 |
China, 2004 |
Mosquito |
III |
DQ404112 |
| XZ0934 |
China, 2009 |
Mosquito |
V |
JF915894 |
| SH-53 |
China, 2001 |
Mosquito |
I |
AY555757 |
| JKT1749 |
Indonesia, 1979 |
Mosquito |
II |
U70405 |
| JKT9092 |
Indonesia, 1981 |
Mosquito |
IV |
U70409 |
| JKT7003 |
Indonesia, 1981 |
Mosquito |
IV |
U70408 |
| JKT5441 |
Indonesia, 1981 |
Mosquito |
II |
U70406 |
| 2372 |
Thailand, 1979 |
Human |
I |
U70401 |
| Chiang Mai |
Thailand, 1964 |
Human |
III |
U70393 |
| HK8256 |
Taiwan, 1972 |
Mosquito |
III |
U03691 |
| IND/10/WB |
India, 2010 |
Human CSF |
III |
JN189785 |
| IND/10/WB/JEV28 |
Midnapore, India, 2010 |
Human CSF |
I |
JN703381 |
| IND/10/WB/JEV21 |
Midnapore, India, 2010 |
Human CSF |
I |
JN703382 |
| IND/10/WB/JEV38 |
South 24 Pgs, West Bengal, India, 2010 |
Human CSF |
III |
JN968470 |
| IND/10/WB/JEV37 |
Hooghly, West Bengal, India, 2010 |
Human serum |
III |
JN968471 |
| IND/10/WB/JEV44 |
Malda, West Bengal, India, 2010 |
Human CSF |
III |
JN968468 |
| IND/10/WB/JEV41 |
Malda, West Bengal, India, 2010 |
Human CSF |
III |
JN968469 |
| IND/10/WB/JEV40 |
Howrah, West Bengal, India, 2010 |
Human CSF |
III |
JN968472 |
| IND/10/WB/JEV39 |
Birbhum, West Bengal, India, 2010 |
Human CSF |
III |
JN968473 |
| IND/10/WB/JEV42 |
Murshidabad, West Bengal, India, 2010 |
Human serum |
III |
JN968474 |
| IND/10/WB/JEV43 |
Murshidabad, West Bengal, India, 2010 |
Human serum |
III |
JN968475 |
| IND/10/WB/JEV35 |
Nadia, West Bengal, India, 2010 |
Human serum |
III |
JN968476 |
| IND/10/WB/JEV36 |
Nadia, West Bengal, India, 2010 |
Human serum |
III |
JN968477 |
| MVEV-1-51 | Australia, 1951 | Human | AF161266 |
All strains/isolates are JEV, except Murray valley encephalitis virus strain (MVE-1-51) used as out group for phylogenetic analysis in this study.