Table 2. Statistically significant mutated non-coding regions.

Regions of predicted regulatory potential showing mutation frequency beyond that expected by chance are shown (q < 0.25).

Chr	Start	End	Length	Muts	Samples	p-value	q-value	Separation	Gene	Coding events
1	554350	555310	960	3	3	3.86 × 10−6	0.11	494, 44	AK125248 (intron)
1	82793220	82793300	80	2	2	8.39 ×10−6	0.19	8	TTLL7/LPHN2 (IGR)
1	147333070	147335140	2070	4	3	2.47 × 10−6	0.09	350, 1, 85	NBPFA (intron)
2	40865560	40865630	70	2	2	4.99 × 10−6	0.14	2	SLC8A1/PKDCC (IGR)
3	149273920	149274010	90	2	2	4.80 × 10−6	0.14	78	ZIC4/AGTR1 (IGR)
3	189142550	189143600	1050	8	5	5.55 × 10−14	3.9×10−8	298, 8, 17, 26, 26, 80, 1	BCL6/LPP (IGR)
3	189440810	189441310	500	3	3	2.64 × 10−6	0.09	1, 291	LPP (intron)
4	7819430	7819530	100	2	2	8.01 × 10−6	0.18	26	AFAP1 (intron)	Missense mutation
4	39875900	39876610	710	3	2	5.88 × 10−6	0.16	109, 412	RHOH (intron)
4	62180540	62181370	830	3	3	1.05 × 10−5	0.22	211, 432	LPHN3 (intron)
4	157902080	157904460	2380	4	4	6.95 × 10−6	0.17	996, 423, 443	PDGFC (3′UTR/intron)
7	92754250	92754270	20	2	2	2.03 × 10−7	0.02	1	CCDC132 (intron)
9	16564360	16565100	740	3	2	8.65 × 10−6	0.19	250, 76	BNC2 (intron)
12	120943010	120943460	450	3	3	6.99 × 10−7	0.04	17, 9	BCL7A (promoter)
12	120943580	120946950	3370	4	3	1.47 × 10−8	0.0017	2055, 657, 295	BCL7A (promoter/intron)
14	68327320	68333190	5870	4	4	7.05 × 10−6	0.17	397, 156, 35	ZFP36L1 (intron)	Indel
17	8106910	8111850	4940	4	2	4.85 × 10−6	0.14	1483, 389, 83	PFAS (intron)	Complex rearrangement
20	60328960	60329510	550	2	2	1.42 × 10−6	0.06	120	LAMA5 (intron)	Missense mutation