Table III. Differentially up-regulated genes common to HC28 and HC26 lines.
References are as follows: 1, Martínez and Chrispeels (2003); 2, Kamauchi et al. (2005).
| Gene | Descriptiona | Name | Fold Change |
UPR Gene | Reference | |
|---|---|---|---|---|---|---|
| HC28 | HC26 | |||||
| Protein folding | ||||||
| At4g24190 | GRP40 ortholog, involved in protein folding | AtHsp90-7 | 7.2 | 5.71 | x | 1, 2 |
| At1g56340 | Calreticulin1 | CRT1A | 3.82 | 2.85 | x | 2 |
| At1g09210 | Calreticulin2 | CRT1B | 4.27 | 3.89 | x | 1, 2 |
| At3g54960 | PDIL protein1 (TRX superfamily) | AtPDI1 | 3.7 | 2.98 | ||
| At1g21750 | PDIL protein5 (TRX superfamily) | AtPDI5 | 3.07 | 4.2 | ||
| Glycosylation/modification | ||||||
| At1g14360 | UDP-Gal transporter, localized in ER | UTR3 | 3 | 2.88 | ||
| Translocation | ||||||
| At5g50460 | SEC61 γ-subunit | MBA10.8 | 3.39 | 3 | x | 2 |
| At4g24920 | Similar to SEC61 γ-subunit | F13M23.60 | 2.57 | 3.32 | x | 1, 2 |
| At1g52600 | Signal peptide processing | F6D8.18 | 3.07 | 2.92 | ||
| Protein degradation | ||||||
| At1g65040 | Homolog of yeast HRD1 | ATHRD1B | 3.99 | 3.05 | x | 2 |
| Unclassified | ||||||
| At2g25110 | Similar to stromal cell-derived factor2 | ATSDF2 | 3.54 | 3.33 | x | 1, 2 |
| At3g62600 | Forms a complex with SDF2 | ERDJ3B | 5.46 | 4 | ||
| Unknown | ||||||
| At3g62510 | PDI related | PDI-like1-2 | 3.22 | 5.1 | ||
| At4g34630 | T4L20.210 | 3.09 | 2.6 | |||
| At4g29520 | T16L4.30 | 5.67 | 4.61 | |||
a
Data relating to gene function were mainly retrieved from the TAIR database.