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. 2012 Nov 28;13:675. doi: 10.1186/1471-2164-13-675

Table 1.

SNP in protein-coding genes of mtDNA between oguC and nap

Gene Nucleic acida Amimo acidb Mutation typec SNP type
nad1
571 C-T
191 L-F
N
transition
nad2
367 T-C
123 C-R
N
transition
nad3
265 T-C
 
S
transition
nad4
77 C-T
26 P-L
N
transition
 
1205 C-T
402 P-L
N
transition
nad7
1079 T-C
360 F-S
N
transition
cox1*
109 C-T
 
S
transition
 
111 T-A
 
S
transversion
 
786 T-G
 
S
transversion
cox2-1
379 T-C
127 W-R
N
transition
ccmB
353 G-A
 
N
transition
ccmC**
126 A-G
 
S
transition
 
155 G-A
52 R-H
N
transition
 
338 G-A
113 R-K
N
transition
 
351 G-A
 
S
transition
 
476 C-A
 
S
transversion
 
533 G-A
178 G-A
N
transition
 
551 G-A
184 G-D
N
transition
ccmFC
283 G-A
95 E-K
N
transition
ccmFN1
361 T-A
121 F-I
N
transversion
 
1000 C-T
334 L-F
N
transition
ccmFN2
380 C-T
127 L-S
N
trnasition
atp1
987 T-C
 
S
transition
atp4
176 C-T
59 A-V
N
transition
atp8*
370 A-C
124 L-I
N
transversion
 
448 T-C
150 A-V
N
transition
atp9
64 A-G
22 I-V
N
transition
rps3
1254 A-C
 
S
transversion
 
1320 A-C
 
S
transversion
rps4
189 T-G
 
S
transversion
 
776 C-T
259 S-F
N
transition
rps12*
12 T-G
4 F-L
N
transversion
 
336 A-C
112 R-S
N
transversion
 
345 A-C
 
S
transversion
rpl2
464 G-A
155 G-D
N
transition
 
840 C-T
 
S
transition
 
1004 C-T
335 S-L
N
transition
rpl5
515 T-C
172 L-P
N
transition
rpl16 506 C-T 169 P-L N transition

a Location of base mutation, bLocation and switch of amino acid mutation, c S,Synonymous; N, Non-synonymous.

* Nucleotide sequence of genes identical to Raphanus sativus ** Two SNPs when compared to Raphanus sativus.