Table 1.
Gene | Nucleic acida | Amimo acidb | Mutation typec | SNP type |
---|---|---|---|---|
nad1 |
571 C-T |
191 L-F |
N |
transition |
nad2 |
367 T-C |
123 C-R |
N |
transition |
nad3 |
265 T-C |
|
S |
transition |
nad4 |
77 C-T |
26 P-L |
N |
transition |
|
1205 C-T |
402 P-L |
N |
transition |
nad7 |
1079 T-C |
360 F-S |
N |
transition |
cox1* |
109 C-T |
|
S |
transition |
|
111 T-A |
|
S |
transversion |
|
786 T-G |
|
S |
transversion |
cox2-1 |
379 T-C |
127 W-R |
N |
transition |
ccmB |
353 G-A |
|
N |
transition |
ccmC** |
126 A-G |
|
S |
transition |
|
155 G-A |
52 R-H |
N |
transition |
|
338 G-A |
113 R-K |
N |
transition |
|
351 G-A |
|
S |
transition |
|
476 C-A |
|
S |
transversion |
|
533 G-A |
178 G-A |
N |
transition |
|
551 G-A |
184 G-D |
N |
transition |
ccmFC |
283 G-A |
95 E-K |
N |
transition |
ccmFN1 |
361 T-A |
121 F-I |
N |
transversion |
|
1000 C-T |
334 L-F |
N |
transition |
ccmFN2 |
380 C-T |
127 L-S |
N |
trnasition |
atp1 |
987 T-C |
|
S |
transition |
atp4 |
176 C-T |
59 A-V |
N |
transition |
atp8* |
370 A-C |
124 L-I |
N |
transversion |
|
448 T-C |
150 A-V |
N |
transition |
atp9 |
64 A-G |
22 I-V |
N |
transition |
rps3 |
1254 A-C |
|
S |
transversion |
|
1320 A-C |
|
S |
transversion |
rps4 |
189 T-G |
|
S |
transversion |
|
776 C-T |
259 S-F |
N |
transition |
rps12* |
12 T-G |
4 F-L |
N |
transversion |
|
336 A-C |
112 R-S |
N |
transversion |
|
345 A-C |
|
S |
transversion |
rpl2 |
464 G-A |
155 G-D |
N |
transition |
|
840 C-T |
|
S |
transition |
|
1004 C-T |
335 S-L |
N |
transition |
rpl5 |
515 T-C |
172 L-P |
N |
transition |
rpl16 | 506 C-T | 169 P-L | N | transition |
a Location of base mutation, bLocation and switch of amino acid mutation, c S,Synonymous; N, Non-synonymous.
* Nucleotide sequence of genes identical to Raphanus sativus ** Two SNPs when compared to Raphanus sativus.