Table 3.
A. carolinensis genes that are unique to the ASU annotation and have vertebrate orthologues
| Gene | ASU |
|---|---|
| Annotated genes |
2,928 |
| Annotated transcript isoforms |
3,612 |
| Annotated isoforms/gene |
1.23 |
|
Transcript | |
| All transcript isoforms |
3,612 |
| Transcripts with start & stop codons |
2,698 |
| Transcripts missing start or stop codon |
914 |
| Single exon transcripts |
301 |
| Transcript N50 length |
2,157 |
| Average coding sequence length |
1,182 |
|
Exon | |
| Total number of exons |
18,921 |
| Exons with start with codon |
2,468 |
| Exons without start or stop codon |
13,901 |
| Exons with stop codon |
2,300 |
| Exons/annotated transcript |
6.35 |
| Average exon length |
188 |
| Total exon length |
3,569,265 |
|
3' UTR | |
| Total transcripts with 3'UTR |
1,323 |
| Average length of transcripts with 3'UTR |
761.2 |
| Total 3'UTR sequence length |
1,007,040 |
|
5' UTR | |
| Total transcripts with 5'UTR |
1,816 |
| Average length of transcripts with 5'UTR |
238.7 |
| Total 5'UTR sequence length |
433,533 |
|
Intron | |
| Total number of introns |
15,835 |
| Average intron length |
5,304 |
| Total intron sequence length | 83,999,254 |