Table 1.
H2and ethanol producing organisms included in meta-analysis of end-product yields and genome content
| Organism | Synonyms | Taxon ID | GenBank # | Sequencing Center | Phyla | C sources |
|---|---|---|---|---|---|---|
|
Caldicellulosiruptor saccharolyticus DSM 8903 |
|
351627 |
NC_009437 |
DOE Joint Genome Institute |
F |
S,C,X |
|
Caldicellulosiruptor besci DSM 6725 |
Anaerocellum thermophilum; Z-1320 |
521460 |
NC_012036 |
DOE Joint Genome Institute |
F |
S,C,X |
|
Pyrococcus furiosus DSM 3638 |
|
186497 |
AE009950 |
Univ of Maryland, Univ of Utah |
E |
S,C,X |
|
Thermococcus kodakaraensis KOD1 |
|
69014 |
NC_006624 |
Kwansei Gakuin Univ, Kyoto University |
E |
S |
|
Thermotoga neapolitana DSM 4359 |
ATCC 49049; JCM 10099; NS-E |
309803 |
NC_011978 |
Genotech corp. |
T |
S,C |
|
Thermotoga petrophila RKU-1 |
|
390874 |
NC_009486 |
DOE Joint Genome Institute |
T |
S,C,X |
|
Thermotoga maritima MSB8 |
DSM 3109 |
243274 |
NC_000853 |
J. Craig Venter Institute |
T |
S,C,X |
|
Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
Thermoanaerobacter tencongensis |
273068 |
NC_003869 |
Beijing Genomics Institute, The Institute of Microbiology, China |
F |
S |
|
Ethanoligenens harbinense YUAN-3 T |
DSM 18485 |
663278 |
NC_014828 |
DOE Joint Genome Institute |
F |
S,C |
|
Clostridium cellulolyticum H10 |
|
394503 |
NC_011898 |
DOE Joint Genome Institute |
F |
S,C,X |
|
Clostridium phytofermentans ISDg |
ATCC 700394 |
357809 |
NC_010001 |
DOE Joint Genome Institute |
F |
S,C,X |
|
Clostridium thermocellum ATCC 27405 |
DSM 1237 |
203119 |
NC_009012 |
DOE Joint Genome Institute, University of Rochester |
F |
S,C,X |
|
Clostridium thermocellum DSM 4150 |
JW20 |
492476 |
ABVG00000000 |
DOE Joint Genome Institute |
F |
S,C,X |
|
Thermoanaerobacter pseudethanolicus 39E |
ATCC 33223 |
340099 |
NC_010321 |
DOE Joint Genome Institute |
F |
S,X |
|
Geobacillus thermoglucosidasius C56-YS93 |
|
634956 |
NC_015660 |
DOE Joint Genome Institute |
F |
S |
| Bacillus cereus ATCC 14579 | DSM 31 | 226900 | NC_004721 | Integrated Genomics Inc. | F | S |
National Center for Biotechnology Information taxon IDs, GenBank accession numbers, corresponding sequencing centers responsible for the generation of the genome sequences data analyzed in this study are provided. Phyla (F; Firmicutes: E;Euryarchaeota: T; Thermotogae), and polymeric carbon sources degraded (S; starch: C; cellulose: X; xylose) by each organism are indicated).