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. 2012 Dec 12;288(5):3289–3304. doi: 10.1074/jbc.M112.387811

TABLE 2.

Amino acid sequences identified by N-terminal sequencing analysis of the 130 kDa band detected in DEAE-enriched condition medium shown in Fig. 4A

Amino acid sequences were aligned by cycle order and identified by a BLAST protein search. Amino acid sequences shown in boldface type aligned with the 130-kDa fragment calculated from the C terminus.

Perlecan Protein core domain Amino acid sequence Amino acid positions P1–P1′ Mast cell proteases
Cathepsins MMPs Others
GALLLA 7–12 A–G S 2, 3
II EAEFA 201–205 T–E
SEGGR 457–461 T–S G, L 2, 9, 11
III VLQSLE 685–690 Q–V 2, 9, 13
SPGQPS 1048–1053 P–S 2, 3, 9
IV SVPLAA 1499–1504 S–S S 2, 3
AELLV 1759–1763 E–A B, D, E, L 2, 3
APSKP 1766–1770 R–A B, L 1, 2
PPQAR 1997–2001 L–P D, E 2
SASLA 2542–2546 S–S S 2, 3
SVHGP 3107–3111 L–S D, E, G 9 Chymase
ALGDP 3512–3516 L–A D, G, S
VELAD 3545–3549 H–V 2, 3
VLLLV 3568–3572 H–V 2, 3
V SVPLS 4060–4064 P–S 2, 3, 9