Table 1.

Comparison of TE calls for the CEU trio for RetroSeq, Tangram (Marth group, unpublished data) and Tea (Lee et al., 2012)

		RetroSeq		Tangram		Tea
Type	Sample	Total	PCR	Total	PCR	Total	PCR
Alu	NA12891	1038	0.97	1192	0.98	1127	0.92
	NA12892	1046	0.98	1185	0.98	1078	0.92
	NA12878	1078	0.98	1326	0.99	1038	0.89
L1	NA12891	121	0.81	190	0.81	286	0.81
	NA12892	127	0.88	219	0.88	262	0.76
	NA12878	174	0.82	227	0.87	168	0.84

The ‘Total’ column is the number of calls predicted by each caller and the ‘PCR’ column indicates the sensitivity of the methods relative to the PCR-validated calls from Stewart et al. (2011).