Table 1.
Category | Value |
No. PCFs | 60 |
No. PCFs that are homologous to complete cattle chromosomes* | 16 |
No. PCFs without outgroup (human) matches† | 1 |
Total length of PCFs | 2.601 gbp |
Maximum length of PCFs | 193 mbp |
Minimum length of PCFs | 251 kbp |
PCF N50 | 87 mbp |
Maximum no. Tibetan antelope scaffolds in PCFs | 111 |
Minimim no. Tibetan antelope scaffolds in PCFs | 1 |
No. cattle EBRs | 64 |
No. other EBRs | 411 |
No. Tibetan antelope scaffolds that have more than one SF | 130 (9%)‡ |
No. Tibetan antelope scaffolds predicted as chimeric | 84 (6%)§ |
EBRs, evolutionary breakpoint regions; PCFs, predicted chromosome fragments; SFs, syntenic fragments.
*These correspond to entire cattle chromosomes 2, 3, 6, 8, 9, 11, 12, 15, 18, 19, 20, 23, 24, 25, 28, and 29.
†There was no mapped human genome fragment to these PCFs.
‡Percentage of the total number of aligned Tibetan antelope scaffolds.
§Among 84 scaffolds, 6 were mapped to three different PCFs, 69 were mapped to two different PCFs, and the remaining 9 were mapped to the same PCF at different and nonadjacent locations.