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. 2012 Dec 23;13:722. doi: 10.1186/1471-2164-13-722

Table 1.

Summary of 454 sequencing data

Species
Number of loci1
Copies/1C2
Reads mapped
Coverage3
Number of clusters
      18S ITS1 18S ITS1 18S ITS1
N. tomentosiformis
1
1400
1190
1592
0.9
1.1
204
190
N. sylvestris
3
5100
2657
3882
0.5
0.8
339
483
N. otophora
2
1500
1469
2308
1.0
1.5
105
303
N. kawakamii 3+dispersed 2200 998 1093 0.5 0.5 138 213

1See Figure 6 and Plant rDNA database - http://www.plantrdnadatabase.com[42].

2The gene copies were initially determined by slot blot hybridisation [43] and later adjusted by calculation from the NGS data [22] using a http://w3lamc.umbr.cas.cz/profrep/ server. For N. kawakamii and N. otophora the copies were determined based on Southern blot signals (Figure 5).

3Mean read-depth: the number of aligned reads divided by rDNA copy number.