Table 1.
Species |
Number of loci1 |
Copies/1C2 |
Reads mapped |
Coverage3 |
Number of clusters |
|||
---|---|---|---|---|---|---|---|---|
18S | ITS1 | 18S | ITS1 | 18S | ITS1 | |||
N. tomentosiformis |
1 |
1400 |
1190 |
1592 |
0.9 |
1.1 |
204 |
190 |
N. sylvestris |
3 |
5100 |
2657 |
3882 |
0.5 |
0.8 |
339 |
483 |
N. otophora |
2 |
1500 |
1469 |
2308 |
1.0 |
1.5 |
105 |
303 |
N. kawakamii | 3+dispersed | 2200 | 998 | 1093 | 0.5 | 0.5 | 138 | 213 |
1See Figure 6 and Plant rDNA database - http://www.plantrdnadatabase.com[42].
2The gene copies were initially determined by slot blot hybridisation [43] and later adjusted by calculation from the NGS data [22] using a http://w3lamc.umbr.cas.cz/profrep/ server. For N. kawakamii and N. otophora the copies were determined based on Southern blot signals (Figure 5).
3Mean read-depth: the number of aligned reads divided by rDNA copy number.