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. 2013 Jan 23;13:19. doi: 10.1186/1471-2148-13-19

Figure 1.

Figure 1

Size-dependent enrichment analysis. A. Incorporation of sizes into enrichment analysis. The size of the objects corresponds to the probability of being drawn. B. Positioning of CNVs on transcriptome. First, CNVs are aligned on the genome. Second, CNVs or part of CNVs that fell outside of the gene areas are excluded or truncated. Third, transcriptome and newly “resized” set of CNVs are used for permutations. C. Rules for CNV-gene pairing at the borders. If CNV falls on the boundary between two gene areas then we count overlap for the gene that contain more than 50% of CNV length. Second, we count overlap with the gene if it is entirely inside a CNV.