Table 2.
List of top ranked CNVs (gene overlap using 10 kb flanks) for population differentiation (at 1% significance level, see Methods for cutoff values in three population pairs)
| CNV | Overlapping genes | F-stat | Pairs |
|---|---|---|---|
| CNVR2664.1 |
ADRA1B |
0.53; 0.67 |
CEU-YRI; YRI_ASN |
| CNVR3865.1 |
IKBKB1,POLB |
0.53; 0.57 |
CEU-YRI; YRI-ASN |
| CNVR1543.1 |
CPNE4 |
0.52; 0.37 |
YRI-ASN; CEU-YRI |
| CNVR1708.1 |
TFRC |
0.47; 0.37 |
YRI-ASN; CEU-ASN |
| CNVR371.1 |
YY1AP1,DAP3 |
0.47; 0.37 |
CEU-YRI; YRI-ASN |
| CNVR2217.1 |
PDLIM31 |
0.47; 0.32 |
CEU-YRI; YRI-ASN |
| CNVR544.1 |
SLC35F32 |
0.46; 0.72 |
CEU-ASN; YRI-ASN |
| CNVR1648.3 |
KCNMB2 |
0.41; 0.77 |
CEU-YRI; YRI-ASN |
| CNVR6782.1 |
CNTNAP4 |
0.41; 0.31 |
YRI-ASN; CEU-YRI |
| CNVR7114.8 |
KIAA1267 |
0.4; 0.3 |
CEU-YRI; CEU-ASN |
| CNVR995.1 |
TUBA3D |
0.39; 0.37 |
CEU-YRI; YRI-ASN |
| CNVR8147.1 |
HMGXB4 |
0.39; 0.36 |
CEU-YRI; YRI-ASN |
| CNVR1373.1 |
PRSS45 |
0.37; 0.31 |
CEU-YRI; YRI-ASN |
| CNVR3347.1 |
BBS9 |
0.35; 0.35 |
CEU-ASN; YRI-ASN |
| CNVR2152.1 |
TLL1 |
0.32; 0.34 |
CEU-YRI; YRI-ASN |
| CNVR4440.1 |
TXN |
0.54 |
YRI-ASN |
| CNVR2807.2 |
FLJ22536 |
0.53 |
CEU-ASN |
| CNVR3563.1 |
GCC1 |
0.49 |
YRI-ASN |
| CNVR3398.2 |
PSPH |
0.47 |
CEU-YRI |
| CNVR1841.1 |
SLIT2 |
0.46 |
YRI-ASN |
| CNVR95.2 |
PADI4 |
0.43 |
YRI-ASN |
| CNVR2906.1 |
C6orf142 |
0.42 |
CEU-YRI |
| CNVR7722.1 |
LILRA3 LILRA5 |
0.42 |
YRI-ASN |
| CNVR6372.1 |
SORD |
0.42 |
CEU-YRI |
| CNVR5162.1 |
C11orf49 |
0.41 |
CEU-YRI |
| CNVR6117.1 |
KIAA0391 |
0.41 |
YRI-ASN |
| CNVR203.1 |
L1TD1 |
0.4 |
YRI-ASN |
| CNVR1009.1 | ZRANB3 | 0.4 | CEU-YRI |